Gene detail

Detailed information of pspe_0.1.m1.23548.m1 in Pachyseris speciosa

Genomic Location: Sc0000139:1230552...1252969
NR annotation: KAJ7387856.1, Cleavage and polyadenylation specificity factor subunit 6 [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

pspe_0.1.m1.23548.m1

gttagggttagggttattagggttagggttagggttaggtttttggggttagagttagggttaggtttagggtTGGGACTAGCATAATTAATGAGGTCCTTTCCATCCctgtgaacgagtgctaaccGTGAGAGACAGaagccgccatcttgttttagTTGGTACATTGTTTGCAGAAGTCATGGCCGGCGACGGAGCTGTGGATATTGATTTGTACGCTACAGTTGATGAATTTGAACCTGAAGTTGCTGGTCAGCACCATATGACAGAAGGGTTGGATCTGTATGATGATGTTCTGACCACCAGAGGAGAGATGCCTGAGGGGACGGAAGATGAAGTATTACATACGCAGTATGAAGAAGATGTCACTGGTGTTGTAGCACCGGAAATCACCCAGTCAGCCTATGAATACAAGTCCTATACAACAGTCCATCCAAAATCAGCGGGTGCCCGATCTTCCAGCACCTATTATGAAAGACATAAaggaagaccactttatgttgGCAATCTGACATGGTGGACGAACGATCAAGAGCTTACAGAGGCCCTTCAAGAGTGTGGTGTCACTGACCTGATTAACATCAAGTTCTTTGAAAACAGAACCAATGGTCAATCTAAAGGATTTGCTATGATTGAACTTGGGTCGGACACATCAGTCCAACTTGTCACTGAAAAGTTGCCTAAAATGGAGATTCATTCTCAGTTACCAGTAGTCACACCAGCAACAAAACAGTACTTACAGCAGTTTGAAGCCCAGTCAAGAAAAAATAACCCAAGCTCGGCAGGAGGCATGCATGGAGATCAGGATGGCACAGGATATCAACAAGGTGGAGGCAGAGGATTTGGTTACAACCGTGGAGGATTCAGAGGCCGTGGATTCCCTATCCGTCCAGGAATGGGGCGAGGGTTTGAACATGGACCTCCACCTGGTGACATGGGTCGTGGAGGACCCTGGATGGGTCCTGGTCACATGGGAATGCCAAGACACCCTCCCCCTGCAACCTCCTCCCCCTGGAGCTGGACCCCTTACAGATCACAGAGCTGCAGGCATGGTTCCACAGTTTGCAAAGCCCCCTGTTGCACCACATGTGAATCCGGCATTCTTCCCTGAAGGTCCTCCTCCTGAAACGTTCCTAGCAGCTGGAACTCCTGGCGTGAGTAGAATGGACATGATGGCACAGTTCATGCCAAGACCAGGCGACGATTTCAGCGAGTCCATGAAAAGAAATCAAATCCTCGCCAGCAGTGCCATCAAACGAGCCATGTCCGACGCCAACGCTGGTGATTATGAAAGCGGAATAGAAACGTTGGTTGGGGCGATATCTCTTATTAAACAGTCACCGACAGCTGCCGAAGAGAGATGCCAGGTTCTTGTTCAGTCGTTACAAGACTGTCTTCAAGGACTGGAGTTGCAGCTGCTCGAAAGAAGGTCGACTGGAAGTAAACATCATTATAGTGACAAGGACGACTATGAAGGAGAAACCAGAGAAAAACGACACAGGCGTAGACGGTCACGGTCTAGGTCACGTGATAGAGATAGGAGatccaggtcacgtgacaagcgcTCGAGATCACGTGAGCGAGAACGCCGCCATCGAAGATGAGGAGTCTCAGGAGGAAAAACTCTCGcgtcgccattttgtttgttgtttccaTGAACAGCATTTTACCACTGTAATACCATACCGTGTATTTTTCGTCACAGGCATCACTTTGAGCAATTTTAGCGCTCTATTTTCGTAAAACTTCATCTTCTGTATAGAATTTTTGACCGTTtccaatttattttattttatttttttggaagTGAACGGAGTATGTATGGTCGGTAGCAATTCGCACTCTTGTGTATGGCTTGGTAGTTGGGAACGGGCGTGCCTCAGTCCGCGCTCGGATCGCTTCCATAGGGAAATATCGGTTCTTCCGATATGCTTCGATACTGCCTATCTACTAACGAATAAGCAGTAGCGTTTACGTTTCGTGCTTTTTGCGAACACTGCCAGTTCAATATTTGTCCTGTTTCGTACGTGTTGTTTTGCTGATTGTAGCCCGTACGCTTTCTCGACTCTTTAGAGCCTGGATACAACCTTAGTGATGAGGTCACTTTGAAATCGTGGACGCCGGCATGTATCGCAACCGTTAACAGATCGAGTTGAAAAAGTCTGACCCGTCAATCTCCCTGAGGCGCGGACAGGTACGTCCAACTCCCCACAACGAAACCCTTCCCAGGCTGCTTTCTCAGGATGAAAGAAAATGAGGCCCTAAGAAAGAGCTTGTATGACCTATATCACATTTTTCTCACTCTCCTTGTCAttgcgctttttt

Protein

Uniprot

Uniprot term	Description
Q5ZL34	Cleavage and polyadenylation specificity factor subunit 6 OS=Gallus gallus OX=9031 GN=CPSF6 PE=2 SV=1
Q6NWC6	Cleavage and polyadenylation specificity factor subunit 6 OS=Danio rerio OX=7955 GN=cpsf6 PE=2 SV=1
Q0P5D2	Cleavage and polyadenylation specificity factor subunit 6 OS=Bos taurus OX=9913 GN=CPSF6 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
--	--	--	--	--

InterPro

InterPro term	Type	Description	Source
IPR034772	Family	CPSF6/7 family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23204	CLEAVAGE AND POLYADENYLATION SPECIFIC FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005847	Cellular Component	mRNA cleavage and polyadenylation specificity factor complex	Interproscan
GO:0098789	Biological Process	obsolete pre-mRNA cleavage required for polyadenylation	Interproscan
GO:0110104	Biological Process	mRNA alternative polyadenylation	Interproscan