Gene detail

Detailed information of pspe_0.1.m1.23873.m1 in Pachyseris speciosa

Genomic Location: Sc0000143:1242946...1257086
NR annotation: CAH3117079.1, unnamed protein product [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

pspe_0.1.m1.23873.m1

GCTCTGTCCCGGTTGCATCAGGTAGAGGTGCTTGGTAGCAGGTTAACAGCTGAGTATGCCAAACCATATCATGAACACCTTGCAGCTCGGCAGTGTTCCAGAGTGTCCCCTCAAACAGAACTTGAAGATAGCTTGAAGaatgaaaaggaaacaaaaaagcAAGAATTCGATCAAGGcaataaagaaaaaatgaaaccCAACACACCGGGAATGGCACCAGGACTAGGTATAAATTACATTCCCAATCCAAGCCTCCACTATGTTTATCCTCCTGTGAATGCTACTATCCTCACCAATATTGCTCATACACTGGCTTGTGTACCAAGATTTTACATTCAGCTTGGTGAAACACCAGAGGAACACCAGGTTGCAGGAGTTTCTTCCGATGATGATAAGTCGATGTCCAGTGAAGAGTCAGAAATTGAAAGTGATGAAGAGGAAAGAGAGAAAAGGATTGTCCAAGAAACTGAGAGAATGTCCATTGCTAAACCAGGTGGCAGTTCTAAGAAGCGTCATAAGGTGCTGTTACACCCTTCACAGCCACCATCCAAGAAGGTTCGAGCAGCCTCTTCGTCTAAACACACACCTGTGGAGAAAGCCTTCGAGCAGCCCACCGGTCAGCCAAAGAAGATAGAGTTCAAACTAACTGAGGCTATTTCAAATATATTTGATTCTGGAGCTTCTGTCACGGTGGCAGCGTCAATTCCACCAGAGACAGAAGGTTTTGGCAGATTTGCACCTCTTGTTGAGGTTGACGACAACAGACAAAatgaagaagaggaggaagGATTGATTTCTGAAGAGAACAATGAGTTCATCTCATCTGCAGAGCTCCGCAGGAATAGAATCAGCAGCAAAGAAATGTCTGAGATATCTGCCTTCAAGAATTACGCACCAGGAGATCCCACTTGCAGACTGTACATAAAAAATCTGGCAAAACATGTCGATGAAAAGGATCTCAAGTACATAttcggtcgctacattgaccaCAGCGTTGAGGAAGAAAAGGACAGGTTTGACGTCCGTCTGATGAAGGAAGGGCGTATGAAGGGGCAAGCTTTTATCACCTTACCCAGTGAAGAAAAAGCCAAGAAGGCTTTACGAGACGCACATGGCTACGTCTTGCATGGAAAGCCTATGGTCATTCAATTCGCACGATCAGCTAAAGCTAAAGACTAGACTTACAGCGACAGAAAAGTAAGAATTGGCGACTATGTCCTGCACGTGATTATCACATGTTCATCTCGCCTATCGACCCCGTGAGAATGCTTGAAAAGCAGGCGCTCTGTGTCCTGGAATGAAATAATCCATGGAAACGAAGAGGTCAAGTTCAAAGAGTGAAAGTTAACCCTATTTGTCAGGTGCTTCTTTGCCTCTCGAGACCTGATGAAAACTCACTTTTGCGAATAATCTCCCCGCCCCAAAGGGACATGAAAACTGAACACTTATTAAATAGAGATATCGCTTATTTAAATCATGTTCAATCTGGATTTTTAATGAGATAAAATTATCTTTGTGGCTTGAATGTGTCCGGTTTCTCTTGAGAGTATCTACGTGACTGAATTTACCTCTTGTGTAAATCCAGGTAGATGTTTCGTACTCCACAAGAGGCAGCAGCATTTGTGGAGGAGCATGGCGCAGATCAAGGCCTCAGATCTATTTcagttcttttgtttgttttttcatcgGTAGGAAAAGTTCGCGAACACATATGTCTTAACTAATTTCGCTCTCTCCTTATGGTGAAGCGACTCTTTTGTACcttaaaacattttgttgtctttCCATAATTCAGAGTTAGTTTCTTTGTACTGGCCACTTCTTTCTGTGTATACTGTTGCACTTGTTTTACACAGTGGTTGCCACATACTTGATCCTCAAAATGAGCTGCTCCGTCCCTGTGTTTCCAGCTCTGCAGTTTCAATTCTACTACAAAATTTAAGATCATTCTTTCCCACCTGACACTGGCTTCGTCCTAGAATATGGCATTGTGCGGTTGTTATCACAATGGACCGCGTTTTCTG

Protein

Uniprot

Uniprot term	Description
F1Q8J0	RNA-binding region-containing protein 3 OS=Danio rerio OX=7955 GN=rnpc3 PE=2 SV=1
Q4G055	RNA-binding region-containing protein 3 OS=Rattus norvegicus OX=10116 GN=Rnpc3 PE=1 SV=2
Q96LT9	RNA-binding region-containing protein 3 OS=Homo sapiens OX=9606 GN=RNPC3 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR045164	Family	RNA-binding region-containing protein RBM41/RNPC3	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16105	UNCHARACTERIZED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0000398	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0005689	Cellular Component	U12-type spliceosomal complex	Interproscan
GO:0030626	Molecular Function	U12 snRNA binding	Interproscan
GO:0097157	Molecular Function	pre-mRNA intronic binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K13157	RNPC3; U11/U12 small nuclear ribonucleoprotein 65 kDa protein	-	Spliceosome	ko03041	deepkoala