Gene detail

Detailed information of pspe_0.1.m1.24143.m1 in Pachyseris speciosa

Genomic Location: Sc0000147:672658...681028
NR annotation: XP_029212769.2, succinate-semialdehyde dehydrogenase, mitochondrial-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

pspe_0.1.m1.24143.m1

GGTACTTTTCCAGGATGGCGGCCTGAATTTGATACTGTTTATTACTTTATTTACGATGTTAATATTATGGGGCGTGCAAAATGAGAGCAACATTTACGTTACCCTGCATTACACTTCAGTTCTTTCGAGGGATGGCTCTGTTCCGAAGCTCTGGTTATATTGGGGGAAATGGAAAGATTGCGACGCAAAATTTCCTGTGTACAATCCAGCGACGGGTGAAGAGATCGGGAGAGTTTCTGATATGGGGAGGAAAGATGCTGGGGAGGCAGTCACTCAGGCTTACGAAGCGTTCAAATCATGGAAGAATGCGACAGCTAATGAGCGTAGCAAGACCATACAGAAGTGGTATGAACTTATCatgcaaaatgaaaaagaacTGGCCGAGTTACTCACTACAGAGCAAGGAAAGCCACTGTTTGAAGCAAAAGGTGAAATCAAGTATGGAGCATCTTATGTTGAGTGGTTTGCTGAGGAAGCAAAGAGAGTGTATGGTGATGTCATCTCTTCACCAAGCCCATCACGGAGACTGTTTGTACTCAAGCAACCTGTTGGTGTTGCTGCCCTATGGACACCATTGGCAGAGGACGCAGGGTTTCCACCTGGTGTTGTAAACACAATTCCCTGTTCCCGAGACAATGTGAATGAAGTGGCAGACGCAATCCTTGGAAATGATCTTGTCTCTAAACTGTCGTTCACAGGTTCTACAAGTACTGGAAAGCTCTTGATGTCAAAGTGTGTTGATCCAATCAAGAGAGTGTCTCTGGAACTGGGAGGCCATGCTCCATTCATTGTGTTTGACTCTGCCAATGTCGATGCAGCAGTCAGTGGAGCACTTGCAGCCAAGTTTAGGCACACTGCTCAGACCTGTATCTGTGCCAATAGAATTCTAGTGCAGGACAAAATTTATGACGATTTTGCAGCCAAGTTTGCTGAAGCTGTGGACAAGCAGATGAAAGTTGGAAATGGCATGGAAGCGTCATCTACTCAGGGGCCACTGATTAATcaaaaagctgtagaaaaagtTGAAAGTCACGTCAAGGATGCTCTGTCTAAAGGAGCAAAATGCCTGCGAGGTGGTCAGCGGCATGAACTAGGAGGTAACTTCTTTCAACCAACAATTCTAACAGAGGTGACACGTGACATGATCATCTGCAAGCAGGAGACATTTGGACCTGTCGCTCCATTGATAAGATTTAAGACTGAAGATGAGGCTGTAGCAGTAGCTAATGATACTTCGGCTGGACTGGCAGgATATTTTTACTCACAAGACATCAGCCAAATCTGGCGTGTAGCAGAAGCTATGGAAGTTGGCATGGTGGGCATCAATGAGGGAATCATTTCATCAGAGATTGCACCCTTTGGTGGCTGGAAGCAATCTGGTTTGGGAAGAGAAGGTTCTAAATATGGCATTGAAGATTACCTTGAGTTAAAGTATGTCTGTCTTGGAGGAATCAGCCAGTCATAAAAGAAGGACTGTGAAGTGACTGAGCATTTATGCTGTATAGCTTATATGCTATGTGGCAAGATGCATTGCACATTGGCTTTGTTGCTAGTGTCGGAGGGTAATAGAACTACATGATTGCGGCTGGCATTTGACCTGCACCCCATGAGAAATAGAAAACTGAAGGTTGTAGACAACTCCTAGAATTCAATCAATGCTGCTGGATCTCTGTTTAACAAAACTGAAACTCAGTTTGTCTACAGACAGGGCAGTAACCTGGTCAATGTGTAACTGTAACTGACTTAATAACATTCAAAATGTTGTTGTATGGAATGATGTGAGTTCAATTCTTATCTGGAACATACAGTGTTTTCTTAGCTTGATGATTGTGACAAACTGAACCATGTACCTCTTTTTTGTTACTTCACAACCAAGCTTCAAATTTACCCCCATTGCTTCCTCTGTCAACTGTATGCATACTGTATTTATTTCAATAAGCACCCAACCTTGAATTAGCTCCCACCTTAATAAGCGCCCAGCCTCGACTAAGTGCCCATCCCCACCctacccccctccccactcAGAACCCCCCAAAAAATGACACTGAAGTGCACAAGAatagtattgattattatttactCAGTGGCTTACAATCTCTAGATTCATTGTCTACGaggattgaaattgaataagtaCCAATAAGAGACTTCCCCAAAGATGGAGTTTTCTTCAGAATATTTTACAAACTTTGCTTTGTAAGATCTTCGTGTTATGTTATTACCATTTATTgatttgttgcaaaataaacatactaCATTTgctgaaaatggtgaaaatttaataagcgctcaccttgaataagcgcccactGTCAAGGTCCAAAAATGTAATAAGCGCCTAGGGCAGTTAATCGAATAAATATGGTGTTCACACAACATTGTGATCAGAGCTGTGagctcaaaataaagaagtcTTTTGT

Protein

Uniprot

Uniprot term	Description
P51650	Succinate-semialdehyde dehydrogenase, mitochondrial OS=Rattus norvegicus OX=10116 GN=Aldh5a1 PE=1 SV=2
Q3MSM3	Succinate-semialdehyde dehydrogenase, mitochondrial OS=Hylobates lar OX=9580 GN=ALDH5A1 PE=2 SV=1
P51649	Succinate-semialdehyde dehydrogenase, mitochondrial OS=Homo sapiens OX=9606 GN=ALDH5A1 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00171	Aldedh	Aldehyde dehydrogenase family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016163	Homologous_superfamily	Aldehyde dehydrogenase, C-terminal	Interproscan
IPR016162	Homologous_superfamily	Aldehyde dehydrogenase, N-terminal	Interproscan
IPR050740	Family	Aldehyde Dehydrogenase Superfamily	Interproscan
IPR016161	Homologous_superfamily	Aldehyde/histidinol dehydrogenase	Interproscan
IPR015590	Domain	Aldehyde dehydrogenase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43353	SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016620	Molecular Function	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0004777	Molecular Function	succinate-semialdehyde dehydrogenase (NAD+) activity	Interproscan
GO:0006807	Biological Process	obsolete nitrogen compound metabolic process	Interproscan
GO:0009450	Biological Process	gamma-aminobutyric acid catabolic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K00139	ALDH5A1; succinate-semialdehyde dehydrogenase	EC:1.2.1.24	Alanine, aspartate and glutamate metabolism	ko00250	deepkoala