Gene detail

Detailed information of pspe_0.1.m1.25321.m1 in Pachyseris speciosa

Genomic Location: Sc0000160:1099385...1112527
NR annotation: XP_029207704.2, DEAD-box ATP-dependent RNA helicase 39-like isoform X1 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

pspe_0.1.m1.25321.m1

atggcggcttcgTTGTGGTGGGGACGAGTTGCTGAATCTCTTCTGATGTGTAGCTGCAATCACGTCAGATGGGCAGCACGCTTGGCCAGTAGAGTCACGCGATCAGGTCCTCGTAGACCTGTTAAACAGGTCAAACAGGTCAAAATGGTTAAACCACCTATGGATGTGAAGACTGCACTAACAAGACAACTTAACAGACGGAGAGAAGTGGCTCTGCGAAGAGTGCCACCAGCTTCAAAACCAAGGGAAGCTGTTCCCGCGGAGGAATCTATCTCCAAAGGACGCATAGAGATTATCATTGAGTCATCGTGTCAAAATCCTGCTTTCACAACAGAAGATATCAAGCTGCAGAAGACTTCATTTAATTCTATGGGTTTAAGAGATGATGTTCTCAAAGGCTTAGAAGTCATGGCAATCACAAAACCCACGGTAACACAGatGGTGTCAATTCCTCCAATTCTCAACAGACAGCATGTTCTTTGTGCAGCTCAGACAGGCACGGGAAAGACGCTCGCTTACCTTTTACCGATAGTTCATCATCTGAAAGAAGAACAAGACCAAGGTGTGATATCGCGGATGAAAAGACCCCGGGCACTGGTTGTTGTACCAAACAGGGAGCTTGCTTTCCAAGTTTTAAGAGTCGCCAAATCGTTGAGTCATAACGCTCGATTCCGTTCAGCTCTCCTCACAGGAGGAAAAAAGTTGAGAGTTTTGAAGTCAGGATTAGAATCTCCAGTGGATCTCTTAGTTGGTACTCCAGGAACGTTACTAGAATTTCGTGAGAGAGGTCGGCTGTTCTTCTCAGACGTGTCATACTTGGTGGTAGATGAAGCTGATTCCATGTTTGACAAGACATTCAAATCCGAAACGATGGACCTTTTACAAACCATGAGCGCAAGAGAGCCCGCCGGCTCGGACAAGCTTTCCTGCAGATACTCAGGTCACTATAGTTGGCGCAACGTTACCAAAAGAACTCGTGGACACACTCCAAGACCTGTTGCCGAAAAGCTTTTAGAACTTTTGAGGGAAGATCTTGAAGAGGCTAATCGGCGAACGGTTGTTTTCTGTAACACTACGCCGAGCTGTGACTACTTAGGCCACTTCCTTACAGATAACGGAGTCTCACACATCAAACTCCATAGTACAATTGCCATTCAGGAAAGAAGTGATCttttcaaagagtttcaacAAGAGAAATCTCGGATTCTTGTGTGCACTGATGTAGCGTCCAGAGGCTTGGACACTGATGTGGATCACGTGATCAACTTTGACTTCCCGCTGAACATCACCGACTATATTCACCGTGTGGGCAGGACTGGCCGCGTGAGGACTGGTGCGAAACAGAGAGAGATCGCGGAAGCCACGAGTTTAATGACGCATAACAGGGATGTGAGAATAGCTTTGATAATCGAGGAAGCGGCTAGAACACAGCGGAGTGTGAAAAGTGTTGAGGCGCGCATGACAAAGCCGATAACTAGGTCACGTGACGCTCTTTCATCAGCGAAACGACCAGGAAAACGTCTAAGCTCGCCCCAAGCCCTTGTCCCCGGCCGCCGTTCGAGGAAACCTTGGCAAGATAAAGAGGATACACCCAGGAGAACAGCAAAGAGTAATCAAAGACGATAACGCATCATTAGTCACGTGACGTGCTAACATGTTAAGGGTCGCGCTTACTCCTCCGCCATTATTTTGAAAAGGCTGGGAAATGGGAAAGAAAGAGAGGAGTGCAATACAAGCATTGAAACCGAGGCGTCAGGGAAGAGAAACGCGTTGATTGTTTGCAACCAGTCCAGAATACTTGGCGCTATCTTGGTGAAAATACACGAAGTGGTGTTGGTTTTCTGTGACATGGTGGTGTTGACGCGATTTAAAACTCCAAGTACTTGACGGTTGAATTGTGAAAACGAGGATGAGAACAATTTACCGTTGAACTGCGATATCAGCTCTCGATTGCGATAATTTAAACGTCTTGCTATCTAGCGCAGCCAGCCAGCCTACCTCGCTCAATGAAGGTTTCCAAGGTTTTCCTGTGTGCTAAAACGATTCTAATCTCGTTCCCATGGGAGATTTGATACGATATAAGGATTCTCCACGAATGATTGGATAAGAGGGCAGAAGAAAATCCACATAAACGCTTGCTGCACGGATAACTCGAACCCAACACACTTTCTCCTCCTTTGCTGACTTCAGTTATTTCAATTGTTAGATCAGATTTTTGTTAATTTAAACAGAACGGTGCTTCGAAGTGTCAGTTGTTTACTGTACCCACAGGCAACCCAACGTATAATGGTTGCGTGACAAACGGGAAAATTGATTATGTAAGTTACCAGCAAATAAAAAGTTATCAAGCACAGTATCAATTCTTATTTCCA

Protein

Uniprot

Uniprot term	Description
Q5VRY0	DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0184500 PE=2 SV=1
Q56X76	DEAD-box ATP-dependent RNA helicase 39 OS=Arabidopsis thaliana OX=3702 GN=RH39 PE=2 SV=2
Q9CWT6	Probable ATP-dependent RNA helicase DDX28 OS=Mus musculus OX=10090 GN=Ddx28 PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014014	Domain	RNA helicase, DEAD-box type, Q motif	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47960	DEAD-BOX ATP-DEPENDENT RNA HELICASE 50	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003724	Molecular Function	RNA helicase activity	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K13178	DDX17; ATP-dependent RNA helicase DDX17	EC:5.6.2.7	Spliceosome	ko03041	deepkoala