Gene detail

Detailed information of pspe_0.1.m1.25403.m1 in Pachyseris speciosa

Genomic Location: Sc0000161:1201412...1203748
NR annotation: XP_022810427.1, E3 ubiquitin-protein ligase TRIM71-like [Stylophora pistillata]

Gene Structure

More details in Jbrowse

Sequence

CDS

pspe_0.1.m1.25403.m1

ATGGATTTTCGAAAGCTGTTTAATAATCTTCGCGAAGAATTGTCTTGTCCAAAGTGTTCAAAATTGTTTAAGGATCCGAGACAGCTTCCCTGCTTGGACAGTTTCTGTCTACATTGTTTGCAGCACTGGCATCAGGCGAGTGGTGGTGAAGATACGTTCAGATGTCCGAAGTGCCAAGCCCTTAGCAGAGTGCCTGCGAGCGGCGATCTAAAGGATCTTCCAGCCAGCTTATATCTCAACGGCTTGATTGATGTGCTGGCCATTAAAGAATGCAACAAAACCCAAGTGACATGCGGGAACTGCGACAAGAAAAGCTTCGAAGCTTCTTATTGTTTTCAATGTTGTAGGTTTTATTGTGAGCAGTGCTTCATTGCACATAACACCATGcgagaaaacaaaaatcaccGCGTTCTTGCTGTAAAAGAGTTCCAAGACAGGGACTATGAAGATGTTCTGAAGCGACCGGTATTTTGTTCAAAACCGCGACACGAGAAGGAAGAACTGAAATTCCTCTGTAAGGACTGTAAAACGGCAGCCTGCCAAAGTTGCTTTAATGTGGAACATTCTGGTCACGCTTCAGTGCACATAGAAGACGAAGCCGAACAACAAAGGACGGAAATGAGGAATATGATAGAAATACAGAGACAGAACTTACAAGCGAGAAAAAACGTAGCTGGGCAACTCAAAGACAGCAAGGCTAAACTAACGCAACAAAGTGAAGACGTCAAGAGACAAGTGCAAACGTTCATTGACAACCTCATCGCAGTccttgaaaagaagaaacaaaatattttcGATGCGGTGGAAAACCAGACAAAGCAGTCAGTTGAAAGTCTAACTACAGAAACGACTAAGATAGAGAATGACATAAAGGTGATCGAAACTTCCTTGGAAAAAGCAGAGAAACTGTTAATACGAAGTAGTGACATTGAAGTTGTACGACAAAATGCTTCACTCCAAAAAATCTTTGAAGGAACTGACCAAAACAAGCCAGTTGCCCATGACCCTGGAAGTCTTCCAACTGTGGTTTTCGTGGAAAATGACAATTTGATGGACACAGTTAAAAGGGAGGAAATTGGCTCCCTGGAAATATCGCGCCACACAAAGGCAAGCCAATCTTTAGCCAAAGGCAAAGGTCTCAACGAAGCGTGTGCTGGAGATGAATCAAAATTCAATGTAATCACGAGAGACTACGAGAAAAGAATGCATTACAACAAGAACGACGTTTTGACTGTTGAGTTCCAAGACGAAAAAAAGCGGAATTGCGAGATGGAAGTGCGAATACAAGATAAGAACACTGGAAAGTACCATGTTAGCTATTGTCCCAGAGATCAAGGCAGATATTCAATTAACATTAAGGTAAACGAGCAACACGTTTGTGGTAGTCCTTATAATTTGCTGGTAAAAACCCGCAAGCAGGCAGCCAGCGCCTCTCGCTATTTTTCACCGGAGCAGGGAGCTTGCTCTCAGGCTATGTCAAGAACAACGCTTCAGTTCAAAcctgtatgttttttttttggagacGAAGATTCGCCTACAGGAAAGCTAACAGAACCTTGTGGGGTGGCAGTGAGTGACATAGATGAGATAGTAGTGACTGACCTACGTATGCACGATGTTAAAATATTCGACTCAAATGGAAAACACTTAACAACGTTCGGTGAGATAGATACCAACCAGAAAAGTCTTTGTCAACCTCGTGGAATTTGTTTTGATAATAAGGGTTATATTTTTGTCGCAGACCATGGTAACAGTACAGTAAAGATTTTTACCAGCAAGGGTATTTTCGAGGGTGAGTTGAGTGAGAACGAAAAGTATGATAGTGTGCTCAATCACCCTCGAGGTTTATCTTTGGATGTCGAGGGTAATATTATCGTTGCTGATTCAAGCAACAAGGTTATTAAGATCTTTAAAACCGATGGTAAGCTTTTAAGGAAGATAAAGGGTGGGTCTTATGGTTTTAAATACCCTGTGCATTGTATTCAGTGTGATGACCGTCTCATAGTGGCAGACAGCTATGAACACAGCATTAAAGTGTTCAGCAAGGAGGGTAAATTTAAGTACGAATTCGGGCGGAAGGGGAGAGGGGATGGTGAGTTTCGTTTTCCCTGTTTTTTGTCTGTGACCAAATCAAAACACCTGATGGTGTGTGATTCACGCAATAATAGGATACAGGTGTTTGACCTGGAAGGCAATTTTGTTGGCAAGTTTGGAACAAAAGGTCATAAGTTAGGACAATTTAACTGTCCAACGTCTGTAGCTGTTTTGAGTAATGATAGAATTGCGGTGTGTGAGTCGGCGAACAAGCGCATTCAAATTTGTGATCTTCAACTTTGA

Transcript

pspe_0.1.m1.25403.m1

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00630	Filamin	Filamin/ABP280 repeat	Domain	Interproscan
PF00643	zf-B_box	B-box zinc finger	Domain	Interproscan
PF01436	NHL	NHL repeat	Repeat	Interproscan
PF15227	zf-C3HC4_4	zinc finger of C3HC4-type, RING	Domain	Interproscan
PF17170	DUF5128	6-bladed beta-propeller	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001298	Repeat	Filamin/ABP280 repeat	Interproscan
IPR017868	Repeat	Filamin/ABP280 repeat-like	Interproscan
IPR001258	Repeat	NHL repeat	Interproscan
IPR000315	Domain	B-box-type zinc finger	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR047153	Family	TRIM45/56/19	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR014756	Homologous_superfamily	Immunoglobulin E-set	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR25462	BONUS, ISOFORM C-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan