Gene detail

Detailed information of pspe_0.1.m1.25906.m1 in Pachyseris speciosa

Genomic Location: Sc0000168:241650...249864
NR annotation: CAH3014235.1, unnamed protein product [Porites evermanni]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

pspe_0.1.m1.25906.m1

ATTCTGGTAATTATACGCTTAACAGCGTGTGAAGATGCAGTTATATTGAGCTTTAACAACTGGTGTTAAATTCCAAATCGTGATAAAACTTACCGACAAAAATACAAAGCCATTACTAAGTATTTTCACAGCCGACTCCGGTCTTTTGCGCAATTTTTCCTGTACTTAACACCGGGTACTGTGTTATCTTACAGAGAGGAGGCAGTTCATTCGCAAGTCGTCATGGCGGATAAAGACGAACTGAATTTTTATGCTATAGCTCTGGGTATAACTCTTCTTTTCACCTTGTTGTTGGTAATCAAACGCGTCTACATGAATCGGCTTTTGCGTAATTTCCAAGGCAAGTACGTCTTTTTAACCGGATGCGACTCTGGTTTCGGCAGAGAAACAGCTCTACGTCTTGACAGCTTGGGATTTAATGTTTTTGCGACGTGTTTAACGAGTAAAGGACGAGCAGATTTGACCGCTGTGTGCAGCGACCGACTTCGCGCTGTTCATTTGGATGTCACAGACTCACACCAGATCAAAGAAGCCTACAAGTTTGTTGCGCAAACACTACCAACAAATACAGGTTTGTGGGGCCTAATCAACAATGCTGGAATCGCCAAAGTTGGTCCAGTTGAATGGCAGACTCTGGCTGACTACAAACGAGTGGCAGATGTGAACCTGTGGGGGCTCATTGACGTCACAAAGGTGTTCCTACCACTGATCAAGAGAGAACGCGGGCGCATCGTAAACATTGCCAGCATAGGTGGTCGATGTTCGTTACCGCACGCGTCAGCGTATTCCATCTCTAAATATGGAGTTGAAGCATTCTCGGACGCGCTCCGCCGCGAACTGAGCCCGACTGGTGTGAAGGTCAGCGTTATAGAGCCAGGCTTCTTCCGGACAAACATCACAAACAAGGACAACCTGCAGGGGTTGTGGGAAGGGCTGTGGGACGAGCTTGATCCCACTTTAAAGGAAGACTATGGTGAAACGTTTTATCGAACAAGTATAAAAAATATGTTGAAAGGAATGGTGGACACTTGTGCATCTCCCCACCTGTATAAGGTAGTCGACTCTATCGTTCACGCCCTGGCGTCACAGCATCCTCAATCCAGGTACGTGGTTGGCTGGGATGCAAAGCTTCTATGGATCTGGGTGTCCAGGCTCCCGGCCGGTATCGGGGACGCCTTGTTGAATTTGCTGGGCGACAAGGCTGAACCTTCTCAGAGCAGACGTCCGTCTGAGAAACCTGATTATAGCACGTTAAAGCTGAATGCAAACAACAATGCGGAGAATGGATTCGTCTTGCAtgaataaaatttgtttaattCTTTAAGAGAGGAAAAcattaacctgcgatcaggcgttctcttTTTTCCCTTTCACAGCCCCCACCCTCACCCCCCAAATAAGAACGCCTGAtcgctagcctccttcgcagacgtctttgggctcgtcacgcgttccttgcccacgaacgtctgctgaactgaaccgccacttccgttcacggtggttagccaatcatagttcgttttccaattttttgaaagtaggacttcgacctcgggattattttcacagtcgatgcacgtgaatcgggtgtcgatttccattcttacgcagctcgttattggtttgttcaaaacaaaggctaaccgccggcgaacggaagtggcagttcagttcagcagacgttcgtgggcaaggaacgcgtgacgagcgcAAAGACGTCTGGGAAGGAGGCtacctgatcgcaggttaagaAACCGTTCGAATTACAACTCACCGTTTGCTTGCAGCTTGtacgcaattgcaaaaagactTGACAAACCCCTTGTTTGGTGGCTTAATTTTTGTGCCTTTTAAGTCAAACCCAGTCACTGACTATCCTCTGCCTCCCAATCAATGTTTTTCCAAAGCCGGATTTTCCTTTCCGTTTTGCGCTACATAGGTTTTTGAATTAACAAGTGAAAGTCTCAGTGAAGTGTCTcaacctttttgaaaaatgctTATAGCTTTCGTTTCAcacttaaaggagctacgtcacggtctttagattttgaaaagtttaacctcaattttcaaaaaggccatttgtaatccgttttaATCTTCTCTGttcttcaccatcctcgccatatctGCATTTATTCtcgtctctttggtgcttatcttccctgagaaattgttatttcactgtttcccattattcaAATGCATTTTTATGTCTCTACCAATGACTCCACGTGACCGAGTTCCTTTAATAGATAGATTACAAATTTCTACGTTTCAGCCGGCGATTTGATGTCATTGCGCAAAATCGTCGGATTCGAATTTCTCGAGGTTTTATTTTGGCGAAATGAGTATTGCCCTCGAATTTAGAGGTCTTTTTCGGCACTTCGCTGGAACTGCGAAAATTAAGACTAAAGAAATTGAACGCGGATAAGGCGGTTGTCGATGTATGGAATATTTAACTTTCTCCTCGAATCGCTATACCATGTTACGGtgtcattaaaaaaatataaattattAGTAGCTTGTTTGCATGTGCTTTGTATACTCTCTGGATTTATATGGCGAAGATTATTTATTCACGCCTCAACCAACATTATATGGAGAAAAGAACGAAGAGCCTGACTTTGCTGTCCAGCTCAATATTATGATGGATCTCTTCGATGGCTATATTATTTTATGGCCAAAATAAACTGttcatgaaaaaataaatatattaaacACCGAAATATTTCATAGTCTTATGATGCTGAGTAACCAAATATGACTGTTCTCTTTTTGGAATGATAAAGTGTCACGAttgtatatacatgtattatAAGGGTGTTTCTTGGAACAAACTTGTCATGTTCATTTATAGTATTGGATGCAAAGATTTCATTAAAATAGCAG

Protein

Uniprot

Uniprot term	Description
Q27979	Retinol dehydrogenase 5 OS=Bos taurus OX=9913 GN=RDH5 PE=1 SV=1
O55240	Retinol dehydrogenase 5 OS=Mus musculus OX=10090 GN=Rdh5 PE=1 SV=1
P55006	Retinol dehydrogenase 7 OS=Rattus norvegicus OX=10116 GN=Rdh7 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00106	adh_short	short chain dehydrogenase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002347	Family	Short-chain dehydrogenase/reductase SDR	Interproscan
IPR036291	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR020904	Conserved_site	Short-chain dehydrogenase/reductase, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43313	SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY 9C	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0008202	Biological Process	steroid metabolic process	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0043231	Cellular Component	intracellular membrane-bounded organelle	Interproscan