Gene detail

Detailed information of pspe_0.1.m1.25909.m1 in Pachyseris speciosa

Genomic Location: Sc0000168:211510...224607
NR annotation: KAJ7370245.1, Vacuolar protein-sorting-associated protein 36 [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

pspe_0.1.m1.25909.m1

CGTCAAAATATGGCGGAACTGTTGGGAGCTTTGTAGATATGGATCGATTTAGCTGGACTTCATCTTCGAATCTGTGTGTTTTACCGGGCGAATCGGGCGTTCATCAACAGTTAGGTGTCAGAATATACGATGGAGACAAAAAGACAACTTTCGAAAATGGAAATCTAAAGCTCACGACGCATAGAATAGTTTGGGATGACTTAGATCAGCAGGACAGAGCCATATCGTTTAAACTGTCTCTTATAAGCAAAGTAGAAGAACAATCTGCTGGGTTCATGACCAGTGCAAAAGTGATCTTCACCCTTCACCCACCACCACCAGACAAAGAACCAGGGCCATGCGTGTCCAGTCCATATGCTTGCATCAAGTTCTCATTCAAACAGGGTGGTCATTCTGAGTTTTTTGCACAGTTAGTGGAGCAGATTAACAAGAAGTCATGGATGCAGCAAACCACACAGACATCCTCTGCAGGAGTACCGGGAAAAGGACTGAGTCGGACCAGGGGAGTTGGAGGAATAGTCGGAATAGAAAGAAAACTGGAACAGAAATCAAAAGAGACTGATGACTACATTCAAAAGGCATTTAAAGATCTGGATGCTCTTATGGAGAAGGCAAAGGAAATGGTTGCTATCGCTGACAAAGTAGCTTCCAAGCTTGAGGAAAAGAAAGGTTCAATAACTGAAGATGAGACAGTCATGTTCAAGTCATACCTGCTGAGTATGGGAATTGCTAATCCAGTCACAAGGGAAACACATGGGTCAGGTGCCAGCTATCACAAGGAACTGGCCAAAGAACTTGGCAAATTCTTAGAGAAGATAATCAAAGATGAAGGAGGTATGATGACTTTGAGTGACGTATATTGTAGATTCAACAGAGCAAGAGGAATGGAGCTGGTTTCTCCTGACGATTTAGTCAATGCAGCAAGACAATTTTCATCTGTGAACATGCCGCTGAGATTAAGAGCTTTTGAAAGTGGTGTCCTTGTTGTACAGGCCTTGTCTCACAGCGATGAAGAAGTGATACGGAATACCAAACAAATTCTTGATGACAAACACTCAGTTACTGCAGAGGAATTGGCCGACTTGGTTAAGATTTCAGTCATGTTAGCCAAAGAAAGGCTCCTGGTTACAGAACAAGCTGGCAAGGCATGCCGGGATGATAGCGTGGAGGGTCTGCGATTTTACCCAAATTTATTTCTTGAGAGAAGAGATTGAGAACAACGCAAGCTCCAACACTTTGACAAGGGACTACCTCAAAGCCTGGCTCAGGAAGATATGCAGAATTCACAGAGATATGTGCCAGTttcaaacaaaatgaaaataaacccTTGCATCACGGACAAAAACACAAGAAACAACTATTTTGAGTGTTGTGAACGGGTCAAGAATAGAAGAGGagagtacagtaaaaacccgcatacaaGAAGACCCATTTTCGGGGTTCAGGCTGATTGGGTTCTTATATATCGGGTATTTTAGGTGAAATCAGCCTGAAAGTGTTCTTaagtgttcttaattttttacttctaaaaaaatgaaagggatttactaactatgatgaaatacataactttgagagaaaattaaacttttacaaatggtgacattcattttattgcatatttttcatgtaattatgAGACTTTTAATTCCAAATACAGTTGTTGTACATTTGCTATACACAGCAAGTGAAATTACAAGCATTTATACAGAGGTCTTAGTGCAATACCACAGTAAAGCTACAGACACTGTTTGTTCTATTAAACTGAAAAGGGAGGAGTtttatatataagaacaattttcaattttcaggctgaatgtgttcttatatatatgctcctttttttttttttaccaaatttcagcctgggtgttcttaatccacatgttcttgtagcgggtttttactgtaggcCTTTGCACTTCTTTCCCGTGATTAGTCACCCTTATACGCAAACCAAGCCTATTTAGAATTAAAAGTCGCTTATATAAGGATTAAATTAAGA

Protein

Uniprot

Gene family

Uniprot term	Description
Q7ZVK4	Vacuolar protein-sorting-associated protein 36 OS=Danio rerio OX=7955 GN=vps36 PE=2 SV=1
Q86VN1	Vacuolar protein-sorting-associated protein 36 OS=Homo sapiens OX=9606 GN=VPS36 PE=1 SV=1
Q6DDF4	Vacuolar protein-sorting-associated protein 36 OS=Xenopus laevis OX=8355 GN=vps36 PE=2 SV=1

Gene family	Subfamily
Ubiquitin Family	UBD\|PH\|GLUE

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04157	EAP30	EAP30/Vps36 family	Family	Interproscan
PF11605	Vps36_ESCRT-II	Vacuolar protein sorting protein 36 Vps36	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR037855	Family	Vacuolar protein sorting protein 36	Interproscan
IPR036390	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR040608	Family	Snf8/Vps36 family	Interproscan
IPR021648	Domain	Vacuolar protein sorting protein 36, GLUE domain	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR011993	Homologous_superfamily	PH-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13128	VACUOLAR PROTEIN-SORTING-ASSOCIATED PROTEIN 36	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000814	Cellular Component	ESCRT II complex	Interproscan
GO:0031902	Cellular Component	late endosome membrane	Interproscan
GO:0032509	Biological Process	endosome transport via multivesicular body sorting pathway	Interproscan
GO:0043130	Molecular Function	ubiquitin binding	Interproscan
GO:0043328	Biological Process	protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway	Interproscan
GO:0032266	Molecular Function	phosphatidylinositol-3-phosphate binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12190	VPS36, EAP45; ESCRT-II complex subunit VPS36	-	Exosome	ko04147	deepkoala