Gene detail

Detailed information of pspe_0.1.m1.26186.m1 in Pachyseris speciosa

Genomic Location: Sc0000171:595487...609069
NR annotation: XP_022800096.1, LIM domain-binding protein 2-like isoform X1 [Stylophora pistillata]
Species Pachyseris speciosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

pspe_0.1.m1.26186.m1

ATGATTGTACCAAACAGTAAATTATCAGAAGAGACAAGAAACATTGTCGATATTATTGTCACATTATTTTCTCTGTGTTTTTCAGCAATAGGACGAAATCTAATTCCAAGATACTTCCGCAGCATATTTGAGGGAGGAGTAAAAGAGCTGTACTACCACGTCGTGCAGCCAAAAGAGTCATTTCACAACAACACCAGTACAATCACACTAGATTGTGAAAATACAACAATGATAACTCATCATAAGACACCGGTCTTCACAAAGGTCTGTACAGAAGGTCGACTTTTACTGGAATTTACTCTGGACGATCTTATGAGAATACGAAACTGGCACTTTGCCATCCGGCATTACACGGAAATGATTCCTCGAAATGTGGTTGTTTCCAGCGCTCAGGATCCTAACTTTCTGGAGCAGTTATCGAAGAACATTACCAGACAAGGCATGACAAATGTCACGCTGAATTACCTCAGGCTCTGTGTTATCTTGGAACCGATGCAAGAGCTCATGTCACGTCACAAGACATATAACATGAACCCAAGagATTGTTTAAAGTCGACACTTTTCCAGAGATGGCAAAGAATGTGTGCCCCTCCAGACTATAATCAGGCTGATATGATTTGGCAGCCCAATACTCCAACGACTCCAGGATCCCCTTTTCCTAAACTTCTTGAGAGAACCCTGACTGGGCAGCCTACATCAACAAAAGCAGAAACTCCACGTGCACCAAGGACGAGGCGGAAACGCAAGTCAACAAATGCAAATTCATCAACTCCCAACACAGGGATGAATAGCACAACAAGTAAAAAGAAATCTCCCAGTACGTCTGGCTTTACCCTAGCAACTCAAGATGTCATGGTTGTTGGAGAGCCCTCTCTTATGGGTGGGGAATTTGGGGATGAAGATGAACGGCTTATTACTAGgcTGGAGAACACTCAGTATGACGCAAGCAATGGCGTTGGTGACAACGGTGACTTTGGTAACAGTCCTATGAGTGGAAGTCCAAGTCTTTGGAGCACAGACCGAAAACCAAATCAAGATGACAATCCAGGAGACTGAGGAACTTCTATTGGACATGGGTTCACCACAGAATTGGCATGGTCATGTATGTCCCAGCAGATGCCTCCCTTAATGTTGCCTTGTGATCTTACATACTGTAAACCTGAGGACGTTTCAGGACTGATGCACAAATGTCATCATGACTTCTTGCCCACAGTTCGTGCTCTGTTTAACAGAGTTTAAATGTAGAGATTTTAAGAGCCAGGGTTGTTTAAAGTTATTTATGCTGTTTCTATTGATATATTGATACACTGGCCAGGTATCCTTATTATATCCAATTTTTATTCACAAAAAATACAGACATAaagtattttccttttttttttcttcacatGACAAAAAAAGTCTTCCATTCATGAAAAACCATGAAAAACAGCTCAGCCAAAGTTTTGCTAGGTAAAAGCATGACTCTAACAGGAGACAAGCAGATGCATAATTAAGGCATTGGTAAACACCCAAGAACTTGTGGCTGTTGATTAGCAAGCAGTGCCTGGAAGTGTGTTTCAAACCAGAAGCAGTACTTGTGTCCCATTTGATAAAAACTGCCCTGCTTTGAACAAATGAATCAAAGAAGAAAGGGAAAGGGTTGGGAACTAATCTCATACCCAGATCTCCCGCGGTCAGTTAGCAGGAGTGGGATCTGAGCATGAGAACAGCTGAGGACCATCTACTCTGATAAATACACTTTGCGTTTATGAGAGTAGCCATTTATTGTCTCCCacccacctttttttttttaagttcttGGAGATAAGCTATCCGATCAAAGTTTGCCGATGCTTTTAGGaggcttcaaacttggatcggtGTTCTTGACGGCATGCTTGAGCAAATTGCACAGCTTATCATTTATACCCAGGAAGGGAGCATGtcttaaaatgtaaataaagctCCTAAGGCGGTCTCCTATTCGCATTTTTAATGGATAGTGAATACCATCCAAAACATCAAGAGTACCTTCATCAGGCAGTGGTTTCACACTTGTTTTTATAGTTATGTTTTGGGGACAGTGAAATAAATACTCTTTCTACTGGAGTGATTGTGCAGTGGCCTTCAAAAGGTTTACATGTAGTTCGCTCAACTTTTGCGCTGCTAAAGTTAGCTCATTGTCAGGCAATATCAGACACTGCATCATTTCCTTTGGGCAGTGAGCTGTTCTAACACTGGCTATTCCTCTTACCCCTTGCTTAGCACCCGTTAAACTCCTTTCAAAATTGGTTTGTTGCAGTTACTTTGTGCTTAGCTTGGATCCTTAAAAGACCGCTCCGTGGTACTTTAGAGCTACCCTCTAAATGCTTGAAAACGTGAGTCCCTGGGAGTACCGCTATGCCCCAGTTAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9W676	LIM domain-binding protein 2 OS=Gallus gallus OX=9031 GN=LDB2 PE=2 SV=1
O55203	LIM domain-binding protein 2 OS=Mus musculus OX=10090 GN=Ldb2 PE=1 SV=2
Q1EQW7	LIM domain-binding protein 2 OS=Xenopus laevis OX=8355 GN=ldb2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001819 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17916 all species →	LID	LIM interaction domain (LID)	Domain	Interproscan
PF01803 all species →	LIM_bind	LIM-domain binding protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029005 all species →	Family	LIM-domain binding protein/SEUSS	Interproscan
IPR041363 all species →	Domain	LIM interaction domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10378 all species →	LIM DOMAIN-BINDING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000122 all species →	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005667 all species →	Cellular Component	transcription regulator complex	Interproscan
GO:0007399 all species →	Biological Process	nervous system development	Interproscan
GO:0030274 all species →	Molecular Function	LIM domain binding	Interproscan
GO:0045944 all species →	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for pspe_0.1.m1.26186.m1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.