Gene detail

Detailed information of pspe_0.1.m1.26408.m1 in Pachyseris speciosa

Genomic Location: Sc0000174:276339...277763
NR annotation: XP_020618827.1, uncharacterized protein LOC110056654 [Orbicella faveolata]
Species Pachyseris speciosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P31851	Protein TabA OS=Pseudomonas amygdali pv. tabaci OX=322 GN=tabA PE=3 SV=1
Q9HK20	Diaminopimelate decarboxylase OS=Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165) OX=273075 GN=lysA PE=3 SV=2
O29458	Diaminopimelate decarboxylase OS=Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16) OX=224325 GN=lysA PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0011536 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02784 all species →	Orn_Arg_deC_N	Pyridoxal-dependent decarboxylase, pyridoxal binding domain	Domain	Interproscan
PF00278 all species →	Orn_DAP_Arg_deC	Pyridoxal-dependent decarboxylase, C-terminal sheet domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029066 all species →	Homologous_superfamily	PLP-binding barrel	Interproscan
IPR009006 all species →	Homologous_superfamily	Alanine racemase/group IV decarboxylase, C-terminal	Interproscan
IPR022657 all species →	Conserved_site	Orn/DAP/Arg decarboxylase 2, conserved site	Interproscan
IPR022644 all species →	Domain	Orn/DAP/Arg decarboxylase 2, N-terminal	Interproscan
IPR022643 all species →	Domain	Orn/DAP/Arg decarboxylase 2, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43727 all species →	DIAMINOPIMELATE DECARBOXYLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008836 all species →	Molecular Function	diaminopimelate decarboxylase activity	Interproscan
GO:0009089 all species →	Biological Process	lysine biosynthetic process via diaminopimelate	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01586	lysA; diaminopimelate decarboxylase	EC:4.1.1.20	D-Amino acid metabolism	ko00470	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.