Gene detail

Detailed information of pspe_0.1.m1.27196.m1 in Pachyseris speciosa

Genomic Location: Sc0000184:463...6463
NR annotation: XP_020631420.1, DNA-binding protein SMUBP-2-like [Orbicella faveolata]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
Q9EQN5	DNA-binding protein SMUBP-2 OS=Rattus norvegicus OX=10116 GN=Ighmbp2 PE=1 SV=1
P38935	DNA-binding protein SMUBP-2 OS=Homo sapiens OX=9606 GN=IGHMBP2 PE=1 SV=3
Q60560	DNA-binding protein SMUBP-2 OS=Mesocricetus auratus OX=10036 GN=IGHMBP2 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13087	AAA_12	AAA domain	Domain	Interproscan
PF01428	zf-AN1	AN1-like Zinc finger	Family	Interproscan
PF01424	R3H	R3H domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000058	Domain	Zinc finger, AN1-type	Interproscan
IPR035896	Homologous_superfamily	AN1-like Zinc finger	Interproscan
IPR047187	Domain	Upf1-like, C-terminal helicase domain	Interproscan
IPR041679	Domain	DNA2/NAM7 helicase-like, C-terminal	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR001374	Domain	R3H domain	Interproscan
IPR050534	Family	Coronaviruses polyprotein 1ab	Interproscan
IPR036867	Homologous_superfamily	R3H domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43788	DNA2/NAM7 HELICASE FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0043139	Molecular Function	5'-3' DNA helicase activity	Interproscan