Gene detail

Detailed information of pspe_0.1.m1.27312.m1 in Pachyseris speciosa

Genomic Location: Sc0000185:493216...497844
NR annotation: CAH3165517.1, unnamed protein product [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

pspe_0.1.m1.27312.m1

ATGGCAGCTGCAGCACCATCACCCCTGGCCAGCTCCACAGAGAAGACGAATGGAGCCAAGCTTAGCAGGCTTCTCATCGATGGCGGGACAACAGTTCTAAAGAGTGTGTTTGACAGTTTTCACCCTCCTGCAAACTTGGTGGCTGATCTTCACGCAAAAAAGCCAAAACTGATTACTCTACGGAGGAAAAAGGTTATAAACAAGCCTCAGTGGGACAAACTGTTCCCACCTGGTGGAGCTGCTCCAGACTCCAACAGTTTTGATATCACTTTGCTGTTCCTCCTTCTGACCAACATTTGTGGACTTTCCCCTCCCCCCACAGGTTGGCATTCTGAGCCACCCCCAAGTGACAACTCTCGTGAAGCAAACCTTTCACGTGTAAAGTTCTTTCGTAATCAGTTGTATGGGCATGTTGCAACCACTGGTGTGGATACAGCATCCTTCAATGCTCTGTGGCTGGAAATCAGTAGTGTTCTTGTGGCTCTAGGGTTGGGACAGGTAGAAATTGATAGATTGAAGGCAGAACGTGGTGGTGAGAAAGATTATCTTGACGCGTTACATGACTGGGCGGAGAGTGAAGAGGATATCAAGTCTCAGCTAAAGGACATACGTCAGTCTCAGCTCACAACCCAACAGACTGTCGAGGAAAATAAATCCAAGCTGGAAGAAGTACATCAGATTGAGAAGGAAACTCATCAAATTGTAACAGAAGACCACGATAGAATTCAAAACAGTATTTCCAAGCTTGAAGTTATTCACCAGGCCCAAATGGACACAAATCGGACTGTTAAGGAACTACACCAGGTGCACCATGAAGACTACAAAACCCTTGAGGATAACAAGAGAAAGCTGGAAAAATTAAGTGAGGCACATGTTGAAACCAGGCAAACTGTTGCGAAAGTGTTGAAGACTCAAGAAGAACATACCGAAACATTGCAGGGATTGCAACGAACATTTGAAGACTCGAAGGGTGGAGAGAGTAATCAAGAGGATGAAATTTTGAAGAAGCTTGCCAAGGTTGATACACAAAACGATGTCAAATATTACGCAGAGAGGTACTTGGAAGGAACACGTGAGTCCATCTTTGCAAAAGTCGAGGGGTGGTTGGATAACAGAAACTCTCCAAACCGCGTGATGGTGATTAGTGCAACTCCAGGAATGGGGAAATCTGTGATAGCAGCTGTGATGTGTAAAAGAATGAAAGAAGTTGGAAGACTGTCAGGGAGCCACTTCTGTCATTATGACAAAGCACGCCACAGGAATCCCAAGGTGATGTTGCAGTCCTTGGCGTGCCACCTGTCTAACTGTCTTCCAGAATACAAGAAAGCACTTGTGGAACAGCTGTCTAGAAATTTAGGTGTGGAGATCAATAGCATGGGAGTTGGGGAGctgtttgaatttctttttgaagaacCCCTAAGCAGATTAAGTGACCCAGGTTTCACCTCTCTTGTGGTAATAGATGCTTTAGACGAAAGTGAATACCAAGGACGAAATGAGCTTTCAGATGTGGTTGGCAAGTACTTTAGCAAGCTTCCACTTTGGGTTCGATTTCTTGTGACAACACGACCTGAAATGAACATTTGGAAGAGCCTGCAAAACTTACAACCGCTGCAACTTGAGCCAAACAGTGAAGAGAACTTGAAAGACATTCGCCTTTACTTTCAACAAAGGTTAATTGGCGTATTGGAAGCCGAAAGCCGCGAAATGATCTTGAATGGTCTCGTACAAAAGTCAGAGGGCGTCATTCTGGGTGCCCAGTTTTTAGTAGATTCCATAAAGAACAACCTTTCAACTCTTACCCTGGAGCAGCTCGACAGCACCTTACCAACGGGCATTTCATTTGTTTACCAGTCCTATTTCAAGCGTCTAGAGACTGAACTTATTCAGGAGCTGAAACTCACCGAAGACCAATTTTTCAGTTTCCTGAGTGCGATCACAGCTGCAAGGGAACCACTGCCACTCGGTTTCGTTTCTAAATTGTTGTTCTCAGGGAAGTGGTCGCCGGCTCTTCAACGAAAAGTACGCAAGGCCATTGGCTGCATCTCATCACTTCTTCCTGTTTCAGATGACCGTATTCACTTCTTTCACAAGTCAGTTAAAGACTGGTTAACAGACAAGTCATGCTACGGGCAGCACAATTTCAGCGTAGAGGAAGACGCAGGCCATTTCATCCTCGCTGGATTCTGCATCGAAGAATATGATGACGTGAAAAGAAGAGGTGTTGATAGCTCAAAACAGTTCACTGATACAGCAGAGTATGCCTTGCAACATGGTGTCCAGCACATGCTACAGTTAGATGAGGGTACGAGATCATACAGCCTTGAAGAGCTTGCAAATAAGTTTGTGATAGACGTAGAACTTGTGTACGCAAAACTCTGTGTAAACGATTCGACAGCCATTGAAGATATGCTTTCTTTTAAGAGGCAGCAAGAGTTTGACGCACTCTCTTCCTCAGCACAGAGTTCCCTTgaaactttattgacccttctAAGGAAACACGGTACGTCCTTAAATGAACTTCCTTCCACTATTTTTCAAATTGTGTTGAATGAAGGAGGACATGAGTTGTCTTCTGAAGTGTCCAAGCTTTTGGAGACCAAATTCTCGGATATACCATACATGGAATACCTGGACAAGGAGGATTTGCAAGGAGCTGTTCAAAATGAGttttattgttcatcagaaGTGGTTTGTTTTGACGTGTCACCACAGTTAGACTACATGGTCTGTGAATGTCGCGATGGAACAATTCAGCTGTGGTCGCTACTTACTGGCAAGCTAATGTGGAAACGTCGGGTCATCAAAATAAAACGTTACAATTCTTTTTTGGGTTCTTTTAGAACGTTTAAAATAGCACGGAGTTTTTTAAAGCCAGATTTTCTTTCTAATTTGGGCGTTGCATTTTTCCGCTCGGTTGTTTTTCATCCCAATAATGAAGTCATCTTACCAGGAGTACTGAGCGAAGCCTACTCCCTTAACGGTGAACTGAATGATCTTTTTCCCGAAAGCCACTGCAGTTTTTCAATTTGTTCAATTTCTGGCGACACGATACTCACTGATTGTCCTGACGATGCCAGATGCCTTGTCATGTGGAATCTGAAGGATGGAAGAGAGATAACTCGTCTCACCAGAGAAGAAGACGTTTTAACGTTTGGATGGTCTCGAGATGGAAGGCTGCTGGCAATTTCCCATTCTTCAGGATCGGTTTGTGTAGTTGATGCGATGAATGGTTTCAGAACACTGGCGAAAACGACCACCTCAAATGTTTGTGGGATGATCAAGTTTTCCCCTGACAATCGATTCCTTTTCTGTTGCCATTGGGAAGGATCCTTTGATGAGATGGGCGGAAATCCTTTATGGTATTCTTGGAGTAACAACCCTGTTTGTTTTCGTCTCGATGTGGGGAACTTCTCACTAGCTGTTTCTTCAGATAGTTGCAGTTTTAAGCCCTGGGAATTTAAATCGCGTAGTGCGGTTGGGTTTATGCTAGGAGATCCATTCTCCTGTTTGAATGAAAGATTGTTTGATGACATTTCAGACGGGAAAGTGTCATTTGATTTTGTTCTTAGTGAACAGTGTGTTTTAAGGAGTCATCCTAGTCGTCATTCAATAACAATGTTGTCTCTTGATAATCTTGGGAAAGACAGAGACGACAGAAACAGTGAAATACGTGAACAGATTGATTctgttgtgttttctttgaatgGCGAGACTGTGTATACCCTGAGGTCTGATTGTTGCAGTCATTCACATGTGCAGATTAAAGCTTGGGACGTCTTAAGTAGGGAACTCAAGGGAGAACTCAGTGGCTCTCTGTATTTTGCCTCTCGCTTCTTTCTTCAACCTGTTAAAGACGGTGTTCTCCTGGGTCCATGCGGGAGAATATGGGAACCAAATCACCCTGTTATTCTTGAATTGTGGAATTTTGACTTGTCTGACTGCATTCGACGTTGGAATGACATAACGTACGTCAAAACGCTAATTCGAATTTCAGACGAATGCGTGTTAGTGAAACACCGGGGACCTGACCGAGTGATCATTCTGGATACAACAACTGGAGAAATAGTAACAACAATCAGTGATTTTCCAGGGCGTATCGTTGCATTCTCCAGCAAATTTCAGCTAATAACTACCCACGACGGTCTGTTGCACTCAGTTCAAAACCCAGTCTGGGAGAAGCGTTTGGCTAGATTCTATGGCTATATGACAGGAATGTTTTCCCCTGCGGGACAGTTTTTTGTGATGGTCTGCAGTAGATATATGCATGAAGTATTCGTTCTCGATGCGCTGTCAGGAAACAGTCTTCACGTATTATATGAAGCCGAGGCCATTCGTAATTTTAAGTGTGAATTTGTTAGTGACGAGGAATGTGTCATTCCTGCCTATAACCGCACAAGTGGCCGCGTTCGCTTTCTGCTCTTCAATGTCAGGTCTGGTGACCTACTAAGTTTGATAGATGGTGAAAGGGAACCAAGGCACCTGGCAAGTTGTCCAAGAAAGGGCCTCGTTGCCATTTCTCCATGGCACTCCAATTTGACGTTCACAGTCATTCAGGTGAAGAATTCTAAGAAAACACCAAGACTGCCCAGGGTGAGGAAAAGGTTAGCTCTAAACATTTATGCATAA

Transcript

pspe_0.1.m1.27312.m1

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18738	HEPN_DZIP3	DZIP3/ hRUL138-like HEPN	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR041249	Domain	DZIP3-like HEPN domain	Interproscan
IPR001680	Repeat	WD40 repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46844	SLR5058 PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan