Gene detail

Detailed information of pspe_0.1.m1.27439.m1 in Pachyseris speciosa

Genomic Location: Sc0000187:557305...563972
NR annotation: KAJ7389950.1, hypothetical protein OS493_028419 [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

pspe_0.1.m1.27439.m1

TTTGATGAGTAAGCCACTGGAAGACTCTTATTTGTTGGTCGTCCTCAGTTTTGGCAAAGCGTTTTAATCAGCGATTTTTCTTAAAACCTAAAAAAGTGTCGTCAAGTCTCTCCCTTTTCCATAATTAACTCGTTGACATCATATCTTGACTTTCACCTGCACGATGTGACCGACTACCAATACAAAGATTCAATATTTTTTGTTACAGGATTGTAGATTAGAAACTTCAGTCAATACACTGACATTGAATAAGCTATGAGTATACCGCAGTCAATGATATATTGAAAAAAAGTGTCTGTTTTTCCTCGTTTTATTgaaatatttcaaacaagaaGGAAGCGATCCTCTCGTAAAGCTCTATCCCGCATGGACATAGCTTAGACATAAAAGAGAAGTGCGGAAAGAATTAGAGCGTATGTGGCAGGCATAGcacaggggcattttgtctgcgcatgctcCAATGGAATGCTAAACGATCGTTCAtggaagccatgttgcttgtAGAACGCTCAATTAATAGTTTTCCGAAAGCGATCTTTTACAGTTAGACGGATGTTATGATAAGACATGAACGAAAGTACGAAGTATTTATGCATTGCTAGTGCTCGGCGTACTCAAAGTGCTTGAAGTGACTTATTTTGAGAAGATCTTAACAGCCAAAAAGTGATCTGGGCGGCCAAACAACCGCGGTTcgtggttttgaaaattaatttcaccgaCTATCCAGATGTTGACATGAGAAGCCAAACAATCAAGATTCATTCCAGCGGTTATCCTCATGAGAACGGGATTACggaacatgcgcagacaaaatgcccctctgctgGCAGGCATACAAATATGTTTTCTTTCTATCCCGAGGACAGCATGAAGAGCAGGCTGGTAAAACGCCAAGAAAACAAGATGGAAAGCAAAAGTGCGAGCCTCGAAACTGTTGAAGAAGCAAAAGAAACTCCCACCCCTTCTATTTACGCGATAGCAGCTGCTCACTCGTTATCAAAGGATATAAAACAAAAGTCACTGCATTTAATGAAAGTCAAAAGACGGCATGGAGACTGGGGACAGTTTGACCTGATGCATGCTTGGTCTCCGGAGGACTTCATGAGTGGGATGGGCAGCAGGCATGGGAGCGGGCTGGCAAGAGACAGCTCACTGACTGAAGACAGCTTGGCGATGGCCCGGCCATTTGTTATGGAACCTCTAAGGATATTTCAGGAACACAGGGTCAAACCCATTATTCAACAAGTATTGGAAACAAACTTAGTGGATCACAGATACGATCCTGACTTCTGTAAAGACGTAACGGTCAAGATGACCGAGGAGATTAAGGAACGAGTCAAAAAGCTTTGTTATCCACGATACAAATTCGTTTGTCACGTGACGGTAGGGGACGTCAATTCGCAGGACGTGAAAATTGTGAGCCGGTGCGCATGGGACTCAGCGGTTGACCGTTTTGCGGAGTACGAGTTCAGAAATTATCATCTATATGCAGTTGGAATTGTCTTTGGAATCTACTGTGAATAGTGCGCAGAGTTTGTGGCTCGGTCGCTCACAGTCTCTTCCTCTTCAAATGTGATCCCCTTCAAATGTGGAGCGCAGTTCTATTTAACACTTAGAtaatgagctcgagatttctatcgggtgatagctgatgagggcgcaccccgaatcagctatcaagcatagaaatcgagagcgaataatctaattgttttagtataaatctactagtcgttcaaaactaaacaagtaaattatccaaatcctcctcgcagacagttcgaaaacgcgaagaagcggactccattttgctgacaacgctactcactatctgtcacagaatagatagcgagtagcgtagccaataagaaaACGGCATTCGTGTTCATGATATTGGCGAGGCTTCGAGATAAAATTGAAAGGATAAGTAAATTTTCCACTTTTGTGCAATCATTTGTTTCATTCAGTCAATCAgccgatcaatcaatcaatcgaccGATCGAACAATCAGtcggtcaatcaatcaatcaatcaatcaatcaatcagtcagtcaactAATCAGTCGATCGATCaaccagtcaatcaatcagtcaataaatcaaccaatcaatcgatcgatcgatcgatcgatcgatcgatcgatcgatc

Protein

Uniprot

Uniprot term	Description
Q9CQ66	Dynein light chain Tctex-type protein 2B OS=Mus musculus OX=10090 GN=Dynlt2b PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03645	Tctex-1	Tctex-1 family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005334	Family	Dynein light chain Tctex-1 like	Interproscan
IPR038586	Homologous_superfamily	Tctex-1-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21255	T-COMPLEX-ASSOCIATED-TESTIS-EXPRESSED 1/ DYNEIN LIGHT CHAIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0005868	Cellular Component	cytoplasmic dynein complex	Interproscan
GO:0007018	Biological Process	microtubule-based movement	Interproscan
GO:0045505	Molecular Function	dynein intermediate chain binding	Interproscan