Genomic Location: Sc0000199:1002452...1027041
NR annotation: XP_020621207.1, lysine-specific demethylase 2B-like [Orbicella faveolata]
Species Pachyseris speciosa · all data for this species · gene families
| CDS |
| pspe_0.1.m1.28307.m1 |
| Transcript |
| pspe_0.1.m1.28307.m1 |
| Protein |
| pspe_0.1.m1.28307.m1 |
| UniProt accession | Description |
|---|---|
| Q640I9 | Lysine-specific demethylase 2B OS=Xenopus laevis OX=8355 GN=kdm2b PE=2 SV=1 |
| Q9Y2K7 | Lysine-specific demethylase 2A OS=Homo sapiens OX=9606 GN=KDM2A PE=1 SV=3 |
| P59997 | Lysine-specific demethylase 2A OS=Mus musculus OX=10090 GN=Kdm2a PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001471 (this species only) |
| Ubiquitin family | E3|E3 activity RING|PHD · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF13621 all species → | Cupin_8 | Cupin-like domain | Domain | Interproscan |
| PF12937 all species → | F-box-like | F-box-like | Domain | Interproscan |
| PF16866 all species → | PHD_4 | PHD-finger | Domain | Interproscan |
| PF02008 all species → | zf-CXXC | CXXC zinc finger domain | Domain | Interproscan |
| PF17811 all species → | JHD | Jumonji helical domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR041667 all species → | Domain | Cupin-like domain 8 | Interproscan |
| IPR019787 all species → | Domain | Zinc finger, PHD-finger | Interproscan |
| IPR006553 all species → | Repeat | Leucine-rich repeat, cysteine-containing subtype | Interproscan |
| IPR032675 all species → | Homologous_superfamily | Leucine-rich repeat domain superfamily | Interproscan |
| IPR001810 all species → | Domain | F-box domain | Interproscan |
| IPR011011 all species → | Homologous_superfamily | Zinc finger, FYVE/PHD-type | Interproscan |
| IPR013083 all species → | Homologous_superfamily | Zinc finger, RING/FYVE/PHD-type | Interproscan |
| IPR002857 all species → | Domain | Zinc finger, CXXC-type | Interproscan |
| IPR050690 all species → | Family | JHDM1 Histone Demethylase | Interproscan |
| IPR003347 all species → | Domain | JmjC domain | Interproscan |
| IPR041070 all species → | Domain | Jumonji, helical domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR23123 all species → | PHD/F-BOX CONTAINING PROTEIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0003677 all species → | Molecular Function | DNA binding | Interproscan |
| GO:0008270 all species → | Molecular Function | zinc ion binding | Interproscan |
| GO:0003712 all species → | Molecular Function | transcription coregulator activity | Interproscan |
| GO:0006357 all species → | Biological Process | regulation of transcription by RNA polymerase II | Interproscan |
| GO:0006482 all species → | Biological Process | protein demethylation | Interproscan |
| GO:0032452 all species → | Molecular Function | histone demethylase activity | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K10276 | FBXL10_11, KDM2; F-box and leucine-rich repeat protein 10/11 | EC:1.14.11.27 | Chromosome and associated proteins | ko03036 | deepkoala |
