Gene detail

Detailed information of pspe_0.1.m1.28572.m1 in Pachyseris speciosa

Genomic Location: Sc0000203:825525...853052
NR annotation: CAH3168579.1, unnamed protein product, partial [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

pspe_0.1.m1.28572.m1

AGTTTTGTTGGAAGACCCTCGGTGTTCCTGACACCGAAATACACTCGCAGCACGAAACCTCAGGACGCCATTTATAACTGGCTCGAAAACGTTCATGCGGGAGGGTTTGAAGTCTGCATCCGGGAATTCTTGGTGTTTGACGGGAAACATCAAGACACCATTGTGCAAGTCTCGTTTAATGCCACTTTTTACGCGCGACCAGTTGTCCTTGTTTCTGTGCACCATCAATATGACCGCCAGAGGCCGACGAGCTCCGTTCTTCCAGAAAATAACATCATCACGGCTTGGGTTGAGGACGTTGGTTTGGAAAATATGTCAGTCTGTGTCAAAGATCTTACAGGAACAGGCAGTGGTCACGATCCTCTTTATGTATACTATGCTGTCACTGGAGACCTCAACCCTTGCCTTAACGTGCATTGCCCACGAGTTGGAATCTGCAAAGCGTACAGTGCGCATGACGCTCGCTGTGAGTGTTTCGACCAATGTCTGTCCTATCAGGATCCAGTGTGCACTGCGAATGGAACAACATACGATAACAAATGCTGGTATGAATTAAGCTACTGCAGGGAGCTGGAAAATAATGTAGTCTACCACCCAGGAAGCTGTGAGGGTTTTCCAGTTGTTAGGGGCCGAATAGACCTCCTTCACGTCCCGAAATGGTCCGACTCAAGCTGCCAAACAGTGAAATTACCACCCTACAGATTCTATCCCGAAAAAAAGATCCATGTCCTACTGACCGTCAGTCACATGAAACTGAACGACACCGTTTCTGTTCACGACGCTGTAACGTCGTGGACTGAAAACATCAGCACGAAACACTTCACGGTCTGTGTCATGCAAACTGGCAGGAAAGAAGAGAACTTTAATCCTTTTGCCACCGTTGATTGGCTGGCTTATCAAGGAGCACCACCCGAGGGACTGACGGGAACAATAAAGCTTCAAAAATGGTGGTCTGGGACAAAATGTGCAGACGTGACTTTTCCGCAGGACAAGTATGACGTGGGACCTATAGTTCTTGTGACGTCGGAACACCTCAGGACTGGTAAGGAGTATGATGCTGCCCTTATTTGGACAGAGGATGTTACGAAAACCTCATTTAAGGCCTGCCTTCGCGAAATGCAGAACTTCGATGGAAAGCATGAAGATATAAGTGTGACTTGGTTTGCGTTCTCTAAACCACACAAACCACATTTTGCCGAGCTTGGTGTTGTTAATTACCCAAACATAAACCCGCCAACAGATGAAAACAACAACGCATACTGCCAGAACATGAATGCCTCTGGATTCAGAGCATGCGTCAAGGAATTGTACGGGACCAGATATGATCCCTTGTCAGTGAGTTATGCGGTCCTTACAGATGCCTGTGAACCTGATTGGAGCTATTTTAACGGATTTTGCTATTACACAAGTGAAATTTGTACAAACTGGACCTCAGCACTGAGAAAATGTCGCCAGGAAAACTccgttcttgttgttgtcaACAATCATGAAGAAAACGTTTATCTGCAACATCGCCATAATGGCGAAAAATCCTGGCTGGGTTTGAACGACATCTCTAAAGAGGGTCACTTCACTTGGGCTGACCGTGGAGCTGGGAATTTTACAGCATGGGCCAAAAACCAGCCAAACAATTTCGGGGAAGAAGATTGTGTACACGCACTTGGTGTTGAATACAACTATGAATGGAATGATGTAAAGTGCAGTGACTGTCATCAGTATACTTGTAAGAAAGATGTCGATGAATGCACTTACAGCTCCGATGGTTGTGATGTTAATGCAGCTTGCACAAACACTTACGGATCGTACAGCTGTGCTTGCAAGCCATCATATTCCGGAAACGGGAAAACTTGCACTGGTTACCGTGGCCTCGATGTATCAGATATTATTGGCAACCTCAACAACAAATACCTCGACAGGTTGAGGTCTTACTTAGACCCAGTCCTCCAGAGTTCAGCCCGCAGTAGGTTTGTGAGGTGTTGGCGCGCTAAGACAGATGGCTGGGCAGCATCCACCTTCCACAGGAACTGTGATGGAAAGGGCCCCACTGTTACTATAATCAAAGTCAGCAGTTACATATTTGGTGGATACACTGACTTGTCTTGGTCCGGTCCAAGTAAGTATTATTATTTCCATAGATGTTTTATATTGAGTTGA

Transcript

pspe_0.1.m1.28572.m1

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00059	Lectin_C	Lectin C-type domain	Domain	Interproscan
PF07534	TLD	TLD	Domain	Interproscan
PF12947	EGF_3	EGF domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001304	Domain	C-type lectin-like	Interproscan
IPR002350	Domain	Kazal domain	Interproscan
IPR018097	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR016187	Homologous_superfamily	C-type lectin fold	Interproscan
IPR018378	Conserved_site	C-type lectin, conserved site	Interproscan
IPR009017	Homologous_superfamily	Green fluorescent protein	Interproscan
IPR006571	Domain	TLDc domain	Interproscan
IPR050111	Family	C-type lectin and snaclec domain-containing protein	Interproscan
IPR016186	Homologous_superfamily	C-type lectin-like/link domain superfamily	Interproscan
IPR037221	Homologous_superfamily	H-type lectin domain superfamily	Interproscan
IPR024731	Domain	EGF domain	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR036058	Homologous_superfamily	Kazal domain superfamily	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan
IPR000152	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22803	MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0038023	Molecular Function	signaling receptor activity	Interproscan