Gene detail

Detailed information of pspe_0.1.m1.28916.m1 in Pachyseris speciosa

Genomic Location: Sc0000208:676645...697550
NR annotation: CAH3153484.1, unnamed protein product [Porites evermanni]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

pspe_0.1.m1.28916.m1

gttcagcagacgttcgtggggaaggaacgtgtgacgagcccaaagacgcctgcgaaggaggctatcagAAGATAGACTTTCAGCAAATTTTAAAAGGTTTTAAAAGGAAACAAAGGAGAACAAGCCAAGCGTGAACCACCGAACATCGGATCGGCAAACGTCCTCTTCTTCATCTAGCTCCCTCTTTCTCCTCCTACAACTCATCCTCTTGTTCCAAAGTCTCCAGAGGAAGAAACCAAGAAAATGGCCTGGGGTGCTTTTCGCAACATCATCTGCGTGTTTTTCTATCTGCTGGCTTtttttcacgAAACACACGGAGTAAGTTTCAGCAGTgaaccaaacaaaacaatagTGGCATTTGCTGGCTCTAACGAAACGTTCACGTGGAAGTTGAATCTCACTGGTGACGACAAATCCAGAGAACTGAAAGCGCAGTTTGGTCCATGGGATAAAAAGTACAGTCTTGTTCATCTATTCCTGATTACCTTCGTTCGAGAACCCTTtggaaaagaaattgaaataaaagCGAACCATCTGATGGCGAAGCGCTTGTTTTGGGCGGGAGATCTAGTACGCAATGACTTTATTGCCTTCCAACTGACGAACGTTCAGCACCAGGATGCAGGAGATTACGGGGTCAGATTCCGTGTGGACTATTTTCCCCCATCGACCCTGGAAAGCTGGTTTTCATTATATGTCGAGgACCCACCAGTCAAACCAACAACAGACACGCGGAATATTACGTTGGAGGTGGTTGAAGGGCAAGGGCTAAACATCACTTGTCGGATTATCATAGAGGGAAACCCAACTGTCTTGTGGATGAGGGAAAACATTCCTGTGTACTCAGGACAGAGCAAGTTCCTCTTGCTTGAAAGTATCAACAGAACACAGGCAGGAAATTACATCTGCGTCTCAGTGAACCGGAATAAGAATAGGACGTCACCCATAACTACTGTTCATGTGTTATATACGCGGAATATTACGCTGGAGGTGGTTGAAGGGCAAGGGCTAAACATCACTTGTCGGATTGTCATGGAGGGAAACCCAACTGTCTTGTGGATGAGGGATAACATTCCTGTGTACTCAGGACAGAGCAAGTTCCTCTTTTTTGAAAGTATCAACAGAACACAGGCAGGGAATTACGTCTGCGTCTCAGTGAACCGGAATGGGAACGGGACATCGCCCATAACTACTGTTAATGTGTTATGCAAGTACATTAGAGTCGATACGCGGAATATTACGCTGGAGGTGGTTGAAGGGCAAGGGCTAAACATCACTTGTCGGATTGTCATAGAGGGAAACCCAACTGTCTTGTGGATGAGGGATAACATTCCTGTGTACTCAGGACAGAGCAAGTTCCTCTTTTTTGAAAGTATCAACAGAACACAGGCAGGGAATTACGTCTGCGTCTCAGTGAACCGGAATGGGAACGGGACATCGCCCATAACTACTGTTAATGTGTTATataAACCAAGCATGCATGCAACAAACAAGTTCGTTTATGTAGTTGCACTGAAAGAAACCGTGACGAGGCTCAAATGTGAAGCAGATGGGAATCCTCCTGCAACATTTCATTGGCATAAAAAAAGCACTGCGATAAGCAGGGGTTTTAACAGTACCTGGAACTCAAGCACTTTGACAGTCGTTCCTACGAAAGACGAAGATTTCGCCCTCTATGTCTGCACAGCCTGGAATAAAGTTGGATGGGACTCAGTTACATTTAGTTTGTATGAAAAAGGCAAGCGAAAATTCCAGCATTACAGAAACTGTTCTTGCTATCAATGAGATGACACTAACAATCTCATCAAGTATATATTAATATCTGCTGTTCTGGGCGTTGTCTTAATTTCCGTCTTCCTTGCTCTTGGATATTTTGTCAAGAGATACAGACGGTCCCGCGAAAACGAGGAGTCCGAGAATAAACGCACTCAGACGCTTGAAATGACTATTGGCGTGTTCAGTGAAAGCGGAGGCAATCAGTGTTCGGCTCTAAAACCGTTACTCGCTGGAGACATCGAGTGCGAAACACCGCGAGCTAACCTCAAGGTTTAAAACGTCATTGGTTGCGGAGCATCTGGCGTAGTGTCACGTGAGTTGGCATTGGATTTGCCAGGAAAACCTGGTTGGACTTAAGTAGCAGCTAAGAgggtcatcgtcgtcgtcgtcatcatcatcttcatcatcattattattaatattattaaagtCATGATTAACTTTAGGTGTTAAAACTTTCTGTAAGGTAGAACAACCAAAATGGCTTGAAAGAGTATCTGCAATGCATGTAAAAGCCATTTAAACATGAGTAATGGAAGTGGGCTTGTTACTTGCAGATGAGTAAGGTTATGGTACGTTTTACTGAGTTTATAACGTTGATTTTGTAGAAGTCTTGTAAGACTACTTTACTattgaactgcattttgatgcGATCTACTGATATTGTGACTGTTAAATTGCGTAATTAGTATGACAGCCTTGTATTGTCTGACGTATAAGCaaaaaagagaaataaaacAGTCCATTGTTATTTTACTTCTGTGTTCGCGtcc

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13927	Ig_3	Immunoglobulin domain	Domain	Interproscan
PF13895	Ig_2	Immunoglobulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR050958	Family	Cell Adhesion and Cytoskeletal Organization	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45080	CONTACTIN 5	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0007156	Biological Process	homophilic cell adhesion via plasma membrane adhesion molecules	Interproscan
GO:0008046	Molecular Function	axon guidance receptor activity	Interproscan
GO:0030424	Cellular Component	axon	Interproscan
GO:0043025	Cellular Component	neuronal cell body	Interproscan
GO:0050808	Biological Process	synapse organization	Interproscan