Detailed information of pspe_0.1.m1.29063.m1 in Pachyseris speciosa

Genomic Location: Sc0000210:598921...613542
NR annotation: CAH3043528.1, unnamed protein product [Porites lobata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
O08791Transcription factor COE3 OS=Mus musculus OX=10090 GN=Ebf3 PE=1 SV=1
O73742Transcription factor COE3 OS=Xenopus laevis OX=8355 GN=coe3 PE=2 SV=2
Q9H4W6Transcription factor COE3 OS=Homo sapiens OX=9606 GN=EBF3 PE=1 SV=2
Gene familySubfamily
Transcription Factors FamilyCOE

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF16422COE1_DBDTranscription factor COE1 DNA-binding domainDomainInterproscan
PF01833TIGIPT/TIG domainDomainInterproscan
PF16423COE1_HLHTranscription factor COE1 helix-loop-helix domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR013783Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR032200DomainTranscription factor COE, DNA-binding domainInterproscan
IPR018350Conserved_siteTranscription factor COE, conserved siteInterproscan
IPR038173Homologous_superfamilyTranscription factor COE, DNA-binding domain superfamilyInterproscan
IPR003523FamilyTranscription factor COEInterproscan
IPR002909DomainIPT domainInterproscan
IPR014756Homologous_superfamilyImmunoglobulin E-setInterproscan
IPR032201DomainTranscription factor COE, helix-loop-helix domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10747TRANSCRIPTION FACTOR COE FAMILY MEMBERInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0000978Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K09103EBF, COE; early B-cell factor-Transcription factorsko03000deepkoala

TOP