Detailed information of pspe_0.1.m1.29660.m1 in Pachyseris speciosa

Genomic Location: Sc0000219:278195...278922
NR annotation: XP_020614252.1, ventral anterior homeobox 1-like [Orbicella faveolata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q91770Homeobox protein not2 OS=Xenopus laevis OX=8355 GN=not2 PE=2 SV=1
Q06615Homeobox protein notochord OS=Xenopus laevis OX=8355 GN=noto PE=2 SV=1
O93528Ventral anterior homeobox 1a OS=Xenopus laevis OX=8355 GN=vax1-a PE=2 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00046HomeodomainHomeodomainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000047Conserved_siteHelix-turn-helix motifInterproscan
IPR050877FamilyEMX/VAX/Noto Homeobox Transcription FactorsInterproscan
IPR001356DomainHomeobox domainInterproscan
IPR009057Homologous_superfamilyHomeobox-like domain superfamilyInterproscan
IPR017970Conserved_siteHomeobox, conserved siteInterproscan
IPR020479DomainHomeobox domain, metazoaInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24339HOMEOBOX PROTEIN EMX-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0000978Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0007417Biological Processcentral nervous system developmentInterproscan
GO:0007420Biological Processbrain developmentInterproscan
GO:0030182Biological Processneuron differentiationInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K24876NOTO; homeobox protein notochord-Transcription factorsko03000deepkoala

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