Gene detail

Detailed information of pspe_0.1.m1.29688.m1 in Pachyseris speciosa

Genomic Location: Sc0000219:729494...732403
NR annotation: PFX16333.1, putative RNA-directed DNA polymerase from transposon BS [Stylophora pistillata]

Gene Structure

More details in Jbrowse

Sequence

CDS

pspe_0.1.m1.29688.m1

ATGAGACTCAAGAAAGCCCGACAGCGCTCAACTCGTCATGTTATCGTCGCTCATCTCAATGTCCGCTCAATGAGATCAAGAGAGAATTTTTACCTCGTTTGGCAGACGATAACCGACAATTGCCTCGACATATTGACAATCTCTGAGTCTTGGCTAGACCCATCTACAAATGATTCTGACTTGCAAATCCCTGGATACATTTTGTTTCGGCAAGATCGTGGATCACTTGGTGGCGGCCTTTGTGTCTACATCAAGGACATTTACAAGGCTTCTGTTATTGGCAATCTTTCTAACATCTCCGAAAATTCCTTTCAGCAACTGTGGCTTAAAGTCATTTGCAAAAAGTTAAAGTCGTTTCTTCTATGTACGGTATATAGACCACCGAATACTCCAATTAGTTTCCTTGAGATCCTGTCGAAATCCTTTATGGATTCCCTGTTGGTTTGGTCAGAGGTTGTGATACTTGGAGACttaaattgcaatgttttggaaGATTGCTACGAAGGCAGAGCCTTGACTGAGTTTTGCTCCACTTTTAATCTTACTCAGCTCGTCGAATCACCAACGAGAGTCACCGAAACTTCTAAATCCATAATTGATATTGTATTAACGACAAATAAGGACTTTGTTGAAAATTGCGTTGTAAAATCTTCGTCTATCAGCGATCACAACCTGGTGTGTTTTAACCTTAAGTTAAAAGCTCCAAGACCTCGTCATTCGTATGTCACCATTCGAAGCTACAAGAACTACGATCGCGATAACTTCCTTGTGGACCTATCTCGTGTCCCATTtcatatggtttatttcttcgAAAGCCTGGATGACCAAGTTGAtgcttttaattgtttatttcttGAGGTTCTTGATGTTTACGCACCATTCAAGCgcataaaaattaaatcacgCCCCAACCCATTCATCACCCAAGAGATCAAACAGTTGATGAAAACTCGTGATTTATGGCACAAAACCGCTAAGCGAACAAGTGATCGCCTCCACTGGAATGCCTACAGATTCTTTAGGCAGGAAGTGAAGCGTGAAATTAGACTCGCTGAGAAAGCGTACGTTCGCACCGAGCTTCAAAACAGCAAAGGAAATTCGAATGCAATTTGGAAAGTGATCAACCGTTGTTTACCAAGGAAGGGAGCGCCTTTGAAAACCGAGAACCCTTTGAGCCTATCCAAAACGTTCAACGAGTTCTATACTTCAGTTGGTAAAGCTACAGCGGATAAAGCAAGATTGATTGCTCGGGAATTTGGCTTTTCTCCAAGCGGTCATGGCTTGTTACACAACTATGCAAATGATGTCCACGAAAATGACCATCGAGaactttttatgttttctgcaGTAACTGAATCTCTAGTTGAAAATATCGTTAATGGTCTACCTTCGAATAAAGCTCCTGGTGCCGACATAATTACATCTAGAGTTCTTAAGGATAGCCTTCCTGCAATACTCCCGATAATCACGCATTTGTTTAACAAGTCGTTTGCCACTGGTACTTTTGCACGATCGTGGAAAATGGCTGAAGTCATACCTGTTCCCAAGTCTGGCGATTTCAACGAACCAGTAAATACGCGCCCTATTTCCTTACTTCCGATATTATCGAAGGTCTGTGAAAGACTCGCCCATCGTCAATTCGTTGATTTTCTGAATCGCTCTGGAAAAATCTCAAAGTTTCAAAGCGGGAATCGTGAATTACACTCTACCGAGACGGCTCTACTTCAATTTACAGATGACATTTTAAAGAACATGGATGAGAAGAAAGTTTCATTGATCAATTCACTGTTGATTAACCCTGACAAGACTAAATTCTTGGTTATTGCAACTCCACAACTCTTACGTAATTTGCCGCGTCTATCCATTACCATTCTTGGAAAGGAGATCGAACCCGTTTCTGTTGCCAGAGATCTGGGTGTCTATATCGACCAGACTCTCAACTATAACGAACATATATCAAAGTTAGTCTCGAACTGTGTTCACAaacttgttcaaataaataggATAAAGCACTTATTAGATCGGAAATCTTTACTTTTAATGATTAATGCCTTCGTATTTAGTAAACTCTTTTATTGTTCGACTGTTTGGGGAAACACATCCAAGTCAAATATAAAGAAGCTACAACTGGTCCAGAACTTTGCAGGAAAGATCGTACTCGGCTTGAAAAAATTCGACCACATCTCTCAAGGCCTTAAATCACTTGGGTGGCTTAGTATAGAGGATAAACTACGATTAAACACAGCCGTCATGGTGCATAAATGCTTACAACATCGGGTGCCCATTTATctgaaagacaaatttgtatataGGTCACAAGTTCATAATAGACAACTTAGATCTGTTGATAACAATGAACTCAACTTGCCACATTGTCGGCTTTCTACTGGCCAGAGGTCATTTGCCTTTCGAGGGGCAAAAGTTTGGAACTCGCTCCCCCTTGATCTAAAGTTAACTTCTTCACTGAaccttttatctTATCtgattttttctatttttaattca

Transcript

pspe_0.1.m1.29688.m1

Protein

Uniprot

Uniprot term	Description
Q9NBX4	Probable RNA-directed DNA polymerase from transposon X-element OS=Drosophila melanogaster OX=7227 GN=X-elementORF2 PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14529	Exo_endo_phos_2	Endonuclease-reverse transcriptase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005135	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46670	ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003824	Molecular Function	catalytic activity	Interproscan