Gene detail

Detailed information of pspe_0.1.m1.29971.m1 in Pachyseris speciosa

Genomic Location: Sc0000223:992540...1020606
NR annotation: PFX20855.1, Hydroxysteroid dehydrogenase-like protein 2 [Stylophora pistillata]
Species Pachyseris speciosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pspe_0.1.m1.29971.m1

ATGAGTCGGCAAAGCAGCATGAGCATGGCTGCCGACAACAACAATTCTAGCAAACGAAGAGAACAACTGGTCGGTAAAACTCTATTTATAACCGGCGCAAGTCGTGGAATTGGAAAGGCCATCGCGCTAAAAGCGGCCCAAGATGGAGCCAACATTATCATTGCTGCAAAAACTACTGAACCTCATCCGAAACTACCAGGAACCATCTACTCCGCAGCAAAAGAAGTTGAAGAGGCAGGTGGGAAGTGCCTTCCATGTGCGATGGACATCCGTGATGAAGGAGCTGTGTTAAAGGCTGTGCAAGATGCTGTGAAGAAGTTTGGTGGTATTGATATACTTGTCAATAATGCTGGTGCTATAAGCTTAACAGGAACCCTGGAGACAACAATGAAAAATTCTAAAGCCTGCCTTCCTTATCTCAAAACTGCACAGAATCCACACATATTAAACATCACCCCACCGCTGAACATGAGACATGACTGGTTCAAGGACAACATTGcctATTCTGTTTCAAAATTTGGAATGACTTTGTGTGTTCTGGGCATGTCACAAGAATTCAAGAATGATGGAATTGCAGTAAATGCTCTGTGGCCTAAGAAAACTATTGCTACAGTTGCTGTGGAAGTGATGTACGGTAAAGAAGGTCTGAAATATTGCCGCACAGAGCAGATCATGGCAGATGCAGCATATGTTATGCTGACAAGAGACAGTCAAACCAGAACTGGAGAGTTTCTTTATGATGAGGATGCTCTCAGAGAGGAAGGAATTACGAACTTTGATCAATACTTGGTTTCCCCAGAGACCGTAATGGCAGAAAGTGCGTTCTCAGGGACCGTGAGGGGAGTGGCAGAGATTTTTGACACAATCAAGAGATCGTGTAATGCAGAGCTTGTCCAGACTGTGAATGGCGTCTTCGAATTTCATTTGTCAGGGAAAGAACCTGGAGTTTGGTATCTTGATTTGAAGAATAATGCGGGGAGCGTTGGCAGCGGTTCTTTTCCCGGCCGAGATACCGACTGCACCATGATTATGGACTCTGAGGATTTCGTAAGAATGTGTCAAGGACAGCTAAACCCAATGCAGGCTCGCATGTTGGAAAAGCTAGAAGTCAGAGGAAACAATATAAAACTAGCTGGTAAAACTATATTTATAACCGGCGCAAGCCGTGGAATTGGAAAGGCCATCGCTCTCAAAGCAGCAAAAGATGGAGCGAATGTTGTTATCGCTGCTAAAACTACAGAGCCCCATCCCAAACTACCTGGAACTATCTATACTGCAGCAAAGGAAGTTGAAGAAGCTGGTGGCAAGTGTCTTCCTTATGCAGTAGACATCCGTGATGAAGGAGCTGTAAACACTGCTGTACAAGAAGCTGTGAAGAAATTTGGTGGCATTGATATACTTATCAACAATGCCAGTGCAATTAGCTTAACAGGAACCCTACAAACACCAATGAAGAGCTCACAAGCCTGTCTACCATATCTGAAGAATGGAAAGAATCCACATATCTTAAATATAAGCCCACCATTAAATATGAAACCCCACTGGTTCAAGAACCATGTTGCTTATACAATGGCTAAGTATGGAATGTCCATGTGTGTTCTTGGCATGGCTGAAGAATTCAAGGATGATGGAATTGCAGTCAATGCTCTTTGGCCCAAAACAGCAATTGCCACTGCAGCAATGGAGATGCTAGGAGGAAAAGAGGCACTAGCGCAGAGCCGCACAGATCAGATCATGGCAGATGCTGCATATGTCATCCTGACAAGAGACAGTCGAGCCAGGACTGGAGAGTTCCTTATAGATGAGGATGTCCTTAAAGACGTAGGAGTCACAGACTTTGAGCAGTACGCCTGTGTACCTGGAAGTAAGCTTTTACCGGACTTCTTCTTGGACGTCGAAGGCCACGATCCTCACAAAATGATTGAGTCGCAAAAGACGATGGCACAAACTGCCTCTCAGGGGAGCACTGGGGGAGGAGTGGCGCAAACTTTTGAGACAATCAAGAGTCTTTGTAACAAGGAGCTCGTCGATGACGTGAAAGGCGTCTTTGAGTTTCATTTAGAAGGCAATGAAGCTGGAGTATGGTATGTCGACCTCAAGAACGACTCAGGAAGTGCCGGAAGCGGATCTTTTCCCGGAGGAGATGCCGGCTGCACCATGATTATGGACTCTGAGGATTTTttgaaaatattcaaaggaGAAATGAACCCGACACAAGCTTTTATGGGAGGAAAACTGAAAATCAAAGGAGACATGATGACAGCAATGAAACTTGAAAAGCTTATGGGAAAGATGAAATCGAAACTCTAA

Transcript

pspe_0.1.m1.29971.m1

AGTTTTCAAGGAGAATTCAAATGAGTCGGCAAAGCAGCATGAGCATGGCTGCCGACAACAACAATTCTAGCAAACGAAGAGAACAACTGGTCGGTAAAACTCTATTTATAACCGGCGCAAGTCGTGGAATTGGAAAGGCCATCGCGCTAAAAGCGGCCCAAGATGGAGCCAACATTATCATTGCTGCAAAAACTACTGAACCTCATCCGAAACTACCAGGAACCATCTACTCCGCAGCAAAAGAAGTTGAAGAGGCAGGTGGGAAGTGCCTTCCATGTGCGATGGACATCCGTGATGAAGGAGCTGTGTTAAAGGCTGTGCAAGATGCTGTGAAGAAGTTTGGTGGTATTGATATACTTGTCAATAATGCTGGTGCTATAAGCTTAACAGGAACCCTGGAGACAACAATGAAAAATTCTAAAGCCTGCCTTCCTTATCTCAAAACTGCACAGAATCCACACATATTAAACATCACCCCACCGCTGAACATGAGACATGACTGGTTCAAGGACAACATTGcctATTCTGTTTCAAAATTTGGAATGACTTTGTGTGTTCTGGGCATGTCACAAGAATTCAAGAATGATGGAATTGCAGTAAATGCTCTGTGGCCTAAGAAAACTATTGCTACAGTTGCTGTGGAAGTGATGTACGGTAAAGAAGGTCTGAAATATTGCCGCACAGAGCAGATCATGGCAGATGCAGCATATGTTATGCTGACAAGAGACAGTCAAACCAGAACTGGAGAGTTTCTTTATGATGAGGATGCTCTCAGAGAGGAAGGAATTACGAACTTTGATCAATACTTGGTTTCCCCAGAGACCGTAATGGCAGAAAGTGCGTTCTCAGGGACCGTGAGGGGAGTGGCAGAGATTTTTGACACAATCAAGAGATCGTGTAATGCAGAGCTTGTCCAGACTGTGAATGGCGTCTTCGAATTTCATTTGTCAGGGAAAGAACCTGGAGTTTGGTATCTTGATTTGAAGAATAATGCGGGGAGCGTTGGCAGCGGTTCTTTTCCCGGCCGAGATACCGACTGCACCATGATTATGGACTCTGAGGATTTCGTAAGAATGTGTCAAGGACAGCTAAACCCAATGCAGGCTCGCATGTTGGAAAAGCTAGAAGTCAGAGGAAACAATATAAAACTAGCTGGTAAAACTATATTTATAACCGGCGCAAGCCGTGGAATTGGAAAGGCCATCGCTCTCAAAGCAGCAAAAGATGGAGCGAATGTTGTTATCGCTGCTAAAACTACAGAGCCCCATCCCAAACTACCTGGAACTATCTATACTGCAGCAAAGGAAGTTGAAGAAGCTGGTGGCAAGTGTCTTCCTTATGCAGTAGACATCCGTGATGAAGGAGCTGTAAACACTGCTGTACAAGAAGCTGTGAAGAAATTTGGTGGCATTGATATACTTATCAACAATGCCAGTGCAATTAGCTTAACAGGAACCCTACAAACACCAATGAAGAGCTCACAAGCCTGTCTACCATATCTGAAGAATGGAAAGAATCCACATATCTTAAATATAAGCCCACCATTAAATATGAAACCCCACTGGTTCAAGAACCATGTTGCTTATACAATGGCTAAGTATGGAATGTCCATGTGTGTTCTTGGCATGGCTGAAGAATTCAAGGATGATGGAATTGCAGTCAATGCTCTTTGGCCCAAAACAGCAATTGCCACTGCAGCAATGGAGATGCTAGGAGGAAAAGAGGCACTAGCGCAGAGCCGCACAGATCAGATCATGGCAGATGCTGCATATGTCATCCTGACAAGAGACAGTCGAGCCAGGACTGGAGAGTTCCTTATAGATGAGGATGTCCTTAAAGACGTAGGAGTCACAGACTTTGAGCAGTACGCCTGTGTACCTGGAAGTAAGCTTTTACCGGACTTCTTCTTGGACGTCGAAGGCCACGATCCTCACAAAATGATTGAGTCGCAAAAGACGATGGCACAAACTGCCTCTCAGGGGAGCACTGGGGGAGGAGTGGCGCAAACTTTTGAGACAATCAAGAGTCTTTGTAACAAGGAGCTCGTCGATGACGTGAAAGGCGTCTTTGAGTTTCATTTAGAAGGCAATGAAGCTGGAGTATGGTATGTCGACCTCAAGAACGACTCAGGAAGTGCCGGAAGCGGATCTTTTCCCGGAGGAGATGCCGGCTGCACCATGATTATGGACTCTGAGGATTTTttgaaaatattcaaaggaGAAATGAACCCGACACAAGCTTTTATGGGAGGAAAACTGAAAATCAAAGGAGACATGATGACAGCAATGAAACTTGAAAAGCTTATGGGAAAGATGAAATCGAAACTCTAAGTATCTCTTTTCACTGATTTCTGAGAGATTTCGTGACGGAGTCACGTCTTTATACCCTCGTAACGCGGCTAAAATTTAGAATCTCCATCAGATGCCTGATATTCGAAATGACGTGACTTGGTCACGTCATGACTAGTGTAACGCAACTTACGTGACGTTTTACTCAGAGGTTAAATGATTCAATTTTTACCGTTGTAAGGCAAGCTGTGTTTGCTTATGGGTTTGAAAACGTCCTCGAAATGGAGTGTAAAGCTCAGAGGAATTTCAAGTTTCAGTCTACTTTAGGGATTAAATATTTTAAGACAAGTGTTTTGTATACCTCAGTTTAGTGCTTTTTCCGTGGCATTATCAATGCTTGTTTTCTCAACGCCTTCTTAAATTTTTACAGTGACTGTAGACATAGGTTGGTATTTGGTCTTATTTGATGGACAAAGGTCTCCATAACAGACATGAAATATTAATGACTTGTCATCTAGCCTAGCCTTCGTTGCAGCCGGACTTGTCACTCAAAACCAGGTGAAAACCGGTGGTTTGcactgtctgcgacgcaggctacctCTAGCCAGAGTTCCTGATAAGATTTAAGGCAgcgtgtcaacaaggaattccaaggGGTCAAATTCCCACAGCTCCCACTAAACCATTAtacattttctcttgatttgtcgggtcatgtagctgacctagTATCTGTAGTATggtttttgacccgagaccCCCTCTAATCTGGAACACTGCTAGCACTTTAACTGATTTTATGGGTGATGTTGGCAGATACGCCGCCAAATCGTGGAGGTAAACCCGAAACTCTTAGTCAAGCTGAACAACCCTTAGCAGTGCTTCTCGCCTTCCCGGtgggtgttatcctcctcaagccttaGGCTTCGGTGGATAACACCCTCgtcgatctgcataattcttcatatcatactcagcctcaGTCCAATAAGTGCTAATTATACAGTGTTGAGTTCAAGGCacctcaagcaaaatcgttggatttctggcttatttatagtgATTAAAGGTTGATATCAgtagtataacagtctatgatatttgcatttagtgatggtgaattttgatgATGG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6P5L8	Hydroxysteroid dehydrogenase-like protein 2 OS=Danio rerio OX=7955 GN=hsdl2 PE=2 SV=1
Q66KC4	Hydroxysteroid dehydrogenase-like protein 2 OS=Xenopus tropicalis OX=8364 GN=hsdl2 PE=2 SV=1
Q6PAY8	Hydroxysteroid dehydrogenase-like protein 2 OS=Xenopus laevis OX=8355 GN=hsdl2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002538 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00106 all species →	adh_short	short chain dehydrogenase	Domain	Interproscan
PF02036 all species →	SCP2	SCP-2 sterol transfer family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002347 all species →	Family	Short-chain dehydrogenase/reductase SDR	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR036527 all species →	Homologous_superfamily	SCP2 sterol-binding domain superfamily	Interproscan
IPR003033 all species →	Domain	SCP2 sterol-binding domain	Interproscan
IPR051935 all species →	Family	Hydroxysteroid dehydrogenase-like protein 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42808 all species →	HYDROXYSTEROID DEHYDROGENASE-LIKE PROTEIN 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for pspe_0.1.m1.29971.m1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.