Genomic Location: Sc0000237:974070...1003214
NR annotation: XP_020601267.1, threonylcarbamoyladenosine tRNA methylthiotransferase-like [Orbicella faveolata]
| CDS | ||||
| pspe_0.1.m1.30918.m1 | ||||
| Transcript |
| pspe_0.1.m1.30918.m1 |
| Protein |
| pspe_0.1.m1.30918.m1 |
| Uniprot term | Description | |||
|---|---|---|---|---|
| Q6NS26 | Threonylcarbamoyladenosine tRNA methylthiotransferase OS=Xenopus laevis OX=8355 GN=cdkal1 PE=2 SV=1 | |||
| Q91WE6 | Threonylcarbamoyladenosine tRNA methylthiotransferase OS=Mus musculus OX=10090 GN=Cdkal1 PE=1 SV=1 | |||
| Q6P4Y0 | Threonylcarbamoyladenosine tRNA methylthiotransferase OS=Xenopus tropicalis OX=8364 GN=cdkal1 PE=2 SV=1 |
| Gene family | Subfamily |
|---|---|
| Ubiquitin Family | E3|E3 activity|RBR |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01938 | TRAM | TRAM domain | Domain | Interproscan |
| PF04055 | Radical_SAM | Radical SAM superfamily | Domain | Interproscan |
| PF00919 | UPF0004 | Uncharacterized protein family UPF0004 | Family | Interproscan |
| PF01485 | IBR | IBR domain, a half RING-finger domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001841 | Domain | Zinc finger, RING-type | Interproscan |
| IPR006466 | Family | MiaB-like tRNA modifying enzyme, archaea/eukaryota | Interproscan |
| IPR013083 | Homologous_superfamily | Zinc finger, RING/FYVE/PHD-type | Interproscan |
| IPR002792 | Domain | TRAM domain | Interproscan |
| IPR007197 | Domain | Radical SAM | Interproscan |
| IPR005839 | Family | Methylthiotransferase | Interproscan |
| IPR020612 | Conserved_site | Methylthiotransferase, conserved site | Interproscan |
| IPR044066 | Domain | TRIAD supradomain | Interproscan |
| IPR013848 | Domain | Methylthiotransferase, N-terminal | Interproscan |
| IPR038135 | Homologous_superfamily | Methylthiotransferase, N-terminal domain superfamily | Interproscan |
| IPR002867 | Domain | IBR domain | Interproscan |
| IPR023404 | Homologous_superfamily | Radical SAM, alpha/beta horseshoe | Interproscan |
| IPR006638 | Domain | Elp3/MiaA/NifB-like, radical SAM core domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11918 | RADICAL SAM PROTEINS | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0035598 | Molecular Function | N6-threonylcarbomyladenosine methylthiotransferase activity | Interproscan |
| GO:0035600 | Biological Process | tRNA methylthiolation | Interproscan |
| GO:0003824 | Molecular Function | catalytic activity | Interproscan |
| GO:0051536 | Molecular Function | iron-sulfur cluster binding | Interproscan |
| GO:0006400 | Biological Process | tRNA modification | Interproscan |
| GO:0016740 | Molecular Function | transferase activity | Interproscan |
| GO:0051539 | Molecular Function | 4 iron, 4 sulfur cluster binding | Interproscan |
| GO:0035596 | Molecular Function | methylthiotransferase activity | Interproscan |
| GO:0005783 | Cellular Component | endoplasmic reticulum | Interproscan |
| GO:0008270 | Molecular Function | zinc ion binding | Interproscan |
Maintained by Dr. Jiajie She from Prof. Longjun Wu's Lab & Prof. Pei-yuan Qian's Lab
Hong Kong Branch of the Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou)
Hong Kong University of Science and Technology
Clear Water Bay, Kowloon, Hong Kong
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