Gene detail

Detailed information of pspe_0.1.m1.31068.m1 in Pachyseris speciosa

Genomic Location: Sc0000240:241630...251413
NR annotation: CAH3025441.1, unnamed protein product [Porites evermanni]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

pspe_0.1.m1.31068.m1

GTTCCCTTTTGATTCGGGGGACACCCGTCCTTTCCTTCCATCCCTCAAATCAACTTTTTTCCTTTGAATTCCTGCTCGTTCTAAGAGCTTTACTCACAAGTGCAAAGTGGATATCCGCTAAGACATCAAACACGTTTGCTCATTTTGCGGGATCGCGCGAGACGCTTAGGTGACTCGGCGCTACAGTCTATCGTGTGCAAGGTACCGTTCTCGGAAATATTACGTGATTAATCATATGACGCCGTTGAGCCTCAGCGTCTCAGGATATCACGTTTCTTGCGGCTATAAAAGCAGTCAACGATCTCCCTCAAATTCACATGCACGTTAAGTTCCGCTTTTGCAACCTCTCGAGGGTAGTCAATCTCTGATTGCATACAGCGAAGTTACGAGGATGTTCCCACTATTGTTCGCTGGGTTACTGTTTGGTATTTTTGCCAGTTCCCAGGCATGTTCCTGCGCGGAAAGTCACCCGCAGGAAAGCTTCTGCTGGGCGCACTTTGTGGTCCGTGCCAAAGTGTTGTCTCAAAAATTAATCCCAGCTAATTACACTCGAGTCTTCGACATCAGAATCCTAAAAACCTTTAAAGGTGGCTTGGTTCTGAATCAGACAGAAGGCATTCGCCCTTACGGCTCCAATCAACGCACCTTGTTTACTAAGGCCTACACGGCTTCGTACGATTCCCTGTGTGGGGTGCAGCTCGCCAACGACGAGGTGTACCTCCTCTCTGGAACTATTTGGAGAGGAAAAATCCAGCTCAGTCTTTGTGCTTGGTATCAGCTTTGGTCCGAAATTACCCCGCAACAACGAGCAGGACTCAGGCGCTTTTATGGTGAAAATTGCGCCTGTCAAATCTCACCGTGTTACGTGGAGCGATGTGAGAAGCTGAAGGGATGTGGCAGGCCATCCGGGATCCATTATGTAAGGGATAAAAGGTCTACGATGGCAGGATTTCTAGCGTATATTATATTCCTGACAAGTGCGTTTACTGTGAGTGAAGCTTGCAAATGTGCGGTGATACATCCACAGACGAGTTTCTGCGTCGCGGATTTTGCCATCCGCGCCAAAGTGTTGGGTAAATCCGTGGACAACAGTACACAGACCAGAATTTACAAACTCAAGATCTTGCAGATATTCAAAGGAGCCGAAGATATTAAAGGAAGTATTGGAACTAAGCTGAAAGGCAAACAAAATCGAGGGAAGCGAGTGGTTCGCGCTTACACCGATCTGGAATCTGCCGCCTGTGGCATACAGCTCAGGAAGACTAAAATCTACCTCCTCCTCGGGTACATCCGGGAACGCAAATTAAGCCTTGGATCGTGTCAATGGTATCAACTGTGGAAAGATACCACTGATCCACAACAACGCGGGCTCAAGAAGCTTTATCGCCGGAACTGCGCATGTCGAATTGACAGGTACTGCTTGAAATCACCACCCGAGACGTGTGATGACATGCTTGGTGGCTGCAATGTGACGGATCCTGATTGGAGGGTCACCGAATGCAAGAAGCAATACTCGTTTTGTGTGAAAAACCCAGACGGGGATGAATGCCATTGGGTTGAgaagaaatctttcaaaaaGTGCTTGCCCTTGCCTTGAAGGATTGAGTGATAATTTTTCAGTTCAAACGTCTTAACACGTCCGTTATGAGTGTTATTTTTTGTTAGTTTATTCATGAAGTTAGTAGTCTGATTATATCAAAAAGAATAGTCTTGAATAACAATGGATAATTTGGATTGAATAAGTAATGGTAACCTTCCAAGTCGATTATAATTACAGCAACAGACATCGTTTTCGAAAGTAAGTTAAAACGTTGGTCATATGTCTGAGTTCGTGACTCAGCAGATTTTACCATTCGCTCTGATGAAGGAACATCCGTGGTAATTATCTTCATGCACATGTCGTCgtcttccccatggggtcgacccctgggccaaccaaggagatatgtggggtaatacaaagagatggatgggattctttcccGAGGGTAAGGAAAATCTcggcattgttttacgatcaaagattggGGAGGGTAGGGGGGGTGAAACAGCGAAGAATACAACACAGTTTTAGTAGAGACATCGTAAAGACACGACAAAAAGCACCCCTTACGACGAATGAGCAATCCTATGAGTATAGCATGTTTTGAGTAGCTCAA

Protein

Uniprot

Uniprot term	Description
Q9JHB3	Metalloproteinase inhibitor 4 OS=Mus musculus OX=10090 GN=Timp4 PE=2 SV=1
P81556	Metalloproteinase inhibitor 4 OS=Rattus norvegicus OX=10116 GN=Timp4 PE=2 SV=2
Q99727	Metalloproteinase inhibitor 4 OS=Homo sapiens OX=9606 GN=TIMP4 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00965	TIMP	Tissue inhibitor of metalloproteinase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008993	Homologous_superfamily	Tissue inhibitor of metalloproteinases-like, OB-fold	Interproscan
IPR001820	Family	Protease inhibitor I35 (TIMP)	Interproscan
IPR001134	Domain	Netrin domain	Interproscan
IPR027465	Homologous_superfamily	Proteinase inhibitor I35b (TIMP), C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11844	METALLOPROTEASE INHIBITOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0008191	Molecular Function	metalloendopeptidase inhibitor activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0002020	Molecular Function	protease binding	Interproscan
GO:0005615	Cellular Component	extracellular space	Interproscan
GO:0010033	Biological Process	obsolete response to organic substance	Interproscan
GO:0010951	Biological Process	negative regulation of endopeptidase activity	Interproscan
GO:0031012	Cellular Component	extracellular matrix	Interproscan
GO:0051045	Biological Process	negative regulation of membrane protein ectodomain proteolysis	Interproscan