Gene detail

Detailed information of pspe_0.1.m1.31420.m1 in Pachyseris speciosa

Genomic Location: Sc0000245:674579...693892
NR annotation: CAH3157892.1, unnamed protein product, partial [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

pspe_0.1.m1.31420.m1

ATGTGCTTGTCTATATTTTTGAAACAAGATGTTCttgaaaatcaccaaaaatactGCAACGGTGTGAAAGGCGCTCCAACAAGAATAGAAATGCCCGAAGAAGGTAAAAACATCTTGAAAttcgaaaacttcaaaaaacaaatgaaagcacctTTCGTTATCTACGCCGACTTTGAAGCAGTATTCACAAAAATTCTGGAagacaaacaagaaaaaacaagatGTACCGAGAAAACAAATGTGCACAAAGCTTGTGGTTTTGCTTTCACATTTGTCAGAAGCGATGGAAGAGTCATGCAGCCCATTTACACTTACAGACCAAAACCAGACTTGAAACAGAAAATGGCAGAAGTATTTCTGAACATGTTGTTGAAAGGTAAAAAAGAGTTGCGAGAAAGTTTGGAATCCcaagaaaaagttaaaatgaGTCAGAATGATTGGGAGCGTTTCAACCACGCAAAAAATTGCCACATTTGCAACGAGCCTTTGGTCAAAGAACAGTTTCTCGATTCAAGACCAACTTATGACATATGGACAGGCAAATATGCagggcaaagccacaaaagctGTTTCttcaaaaagcaaaaaacaatCGTACCCTTGGTAGATGAGTTTGGCAGATACGAAGAcaaaattgtatttgacttcTGGTCCTTTTTGAATGAAAATGACAAACAACCACTCGATTCGATTGACAAATGGATTTTAAAAAATCAACAAGACTGCTTGTTTTGTGGCGAACCCCTGCTGCAAAAAGATTTCAGAGGTGCGTGCCGCGTTGGCCACAGCAAGCCACCGACTGCACTTCAAAGAAAGGTTGCCAGCCAGGATGTGTTGCCTGCCATTGTTGCATCTGCTCCACCTGAAAGCAttgcagaacagcagtatacaTGGCTATATCCCAATCTTCCCAATGCCGAAACTTTCCGGCTGACTGAGcccagcaaaattgaaaaacataTTTCTGATGAGGCCGAGCACTACCAAGTTGTgctgaaaaaatacaaaaaggctcaaaaagcTTGCAGCTATGTTGTTGCCGGTCTTGGAGTTGCAACAATGGCTTTGTCTTCTGGAGTGGTCACCTCTGCACTGATGGGCGTTGGAGTCGTGgtcagtgttcctctcggtgttgtggggGGATTAGGAACACGTTCTAGCTCAAAACGAGACAAACATGGCAGACCAATGTCACATCCAGATTATGATCCTCGAACTTTATTGGTAAGCAAGGCACACTGCCTTGAAACTGGAATCTATGAAAACAATATGATTGTGGCTAATGATCAAAACGTGGGCAAGTGGGAAGATGAAAGTGAAGAGGAACTTGTCTACAAAAGTGCAGCAGAGATAAACTGGAAACTAGCCGAAGGACTTAGGTTTTGCTGTGGAAGAGAAAGTTTTGTCATGACAAAGAAAGCTTTGCCGtggaaaGTTCCTCCATCATTTTTAAACTCCAAAGAAGTCACTCCTGCAATGAAACAGTGGTGGCAACTTAAGAGTGAGAACTTTGACACCGTCCTTTTCTTCAAGGTTGGCAAGTTCTATGAACTGTATAACATGGATGCTACTGTTGGTGTGAAAGAACTTGGGTTGATTTATATGAAGCACTACGCGAAAAGTTCATTCCGAAGGAGTGAATCGAACTACGCGAGGCGTCGGGAACACGAGGAGAAGCTGCCAGATCTCGCGAGTTCGTTGCAGAGGCTCTTTGGGAAAGCATACCCTGAAGCGGTGGCCGATTTGCAAGATAGTCTTGCGAAGGATGAGTTCATCGACGTGTTGGAAGATTGGGAGATATGGATGAAAATCCAAGAATCTGGCCCAAAAACACTTGATGAGGCAGTCAGTCGCGCCTTGCAAATCGAAGCCATGTACGAGGCCGAGTCTCGTTGTAGTGGAGGTCGTTCGGTCCGCCTCGTACAGGAGCCACCGTCCGAACAGGAGAGCAAACTCGTGGAGCTAATCAAGAAGAACACGGCCGCCGTAAATCAAATGGTCCAGTTCATGCAAAAACAACAGACAGAAACTTCGAATGAGCGAAAACAACACGGTCGGGGACTGGGGCCGACAACAAAGGATCGTAGAGAATGGCATTGTTTTAGGTGTCACAAGAAGGGTCATTTTATCGCCAAATGTACCCAACAACCTAGGGATCAGTCGGGAAACTCCAAGTGA

Transcript

pspe_0.1.m1.31420.m1

Protein

Uniprot

Uniprot term	Description
P54276	DNA mismatch repair protein Msh6 OS=Mus musculus OX=10090 GN=Msh6 PE=1 SV=3
P52701	DNA mismatch repair protein Msh6 OS=Homo sapiens OX=9606 GN=MSH6 PE=1 SV=2
E1BYJ2	DNA mismatch repair protein Msh6 OS=Gallus gallus OX=9031 GN=MSH6 PE=3 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01624	MutS_I	MutS domain I	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016151	Homologous_superfamily	DNA mismatch repair protein MutS, N-terminal	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR007695	Domain	DNA mismatch repair protein MutS-like, N-terminal	Interproscan
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19963	CCHC-TYPE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006298	Biological Process	mismatch repair	Interproscan
GO:0030983	Molecular Function	mismatched DNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan