Detailed information of pspe_0.1.m1.32012.m1 in Pachyseris speciosa

Genomic Location: Sc0000254:541298...565188
NR annotation: CAH3148380.1, unnamed protein product [Porites lobata]
Species abbreviation PSPEC · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9Y2L1Exosome complex exonuclease RRP44 OS=Homo sapiens OX=9606 GN=DIS3 PE=1 SV=2
Q9CSH3Exosome complex exonuclease RRP44 OS=Mus musculus OX=10090 GN=Dis3 PE=1 SV=4
Q9SHL7Exosome complex exonuclease RRP44 homolog A OS=Arabidopsis thaliana OX=3702 GN=RRP44A PE=2 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001458 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF17216
all species →		Rrp44_CSD1Rrp44-like cold shock domainDomainInterproscan
PF17849
all species →		OB_Dis3Dis3-like cold-shock domain 2 (CSD2)DomainInterproscan
PF13638
all species →		PIN_4PIN domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR033771
all species →		DomainRrp44-like cold shock domainInterproscan
IPR002716
all species →		DomainPIN domainInterproscan
IPR012340
all species →		Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR050180
all species →		FamilyRNR RibonucleaseInterproscan
IPR029060
all species →		Homologous_superfamilyPIN-like domain superfamilyInterproscan
IPR041505
all species →		DomainDis3-like cold-shock domain 2Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23355
all species →		RIBONUCLEASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000175
all species →		Molecular Function3'-5'-RNA exonuclease activityInterproscan
GO:0000176
all species →		Cellular Componentnuclear exosome (RNase complex)Interproscan
GO:0000177
all species →		Cellular Componentcytoplasmic exosome (RNase complex)Interproscan
GO:0004519
all species →		Molecular Functionendonuclease activityInterproscan
GO:0016075
all species →		Biological ProcessrRNA catabolic processInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for pspe_0.1.m1.32012.m1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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