Gene detail

Detailed information of pspe_0.1.m1.32829.m1 in Pachyseris speciosa

Genomic Location: Sc0000266:909842...927519
NR annotation: CAH3045265.1, unnamed protein product [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

pspe_0.1.m1.32829.m1

ATGGATGCTAAATCTCTTCGAGTGAACGCAGTGAGGTATATGATCATGCCTTTTGACTTGTTGTATTCATTCGCATGGCAAGGAGATCTTAGCAGGGACAACCTAGTAGCCCTTGCAGTACTTCTAGGATGTGACTACCTTCCTCAAGGAGTACCATACGTTGGAAAGGAAAAAGCCTTGAAATTGATCGCAGCGGTCAATCATGGGAGCTTAATTGACAGGAAAGCTTTACAGGACAAGAATTTTGTGAATCGAAAGGCACGAGTATTGCAGGAATATTTGGATCCTAAAGAATTTCAAGTTCCTTCACAACGTTCTTTGAAGAATACGGCTTTTCCAGATCTACCGGGACTGCTGGAATTTTGTAAGAATAATCTACTGTGGCAAGAAGAAAAAATTCTAAGAAAGGTGCTGTTACTGATCACGTACTGGCAAATGAAATCCAAACTTGAACAGGACACCACAATACTAGTTCAGCCACAAAGGATAATAAAAGCTCTAAAACAAGACAAGGAAGAATGTTACAACATTGAATGGCTGAGTGTAAACCAAGAAGGTAGAAGAAAACAGAATGTTTCACTGGAGGCGCCTAAAAAGAAGACGGCatcaaggaaaagaaaagcatCTGACATGGGCCTGAACGCAGAATCAAAGGCAACCGGAACGCCAGGTCCTGCAGAGGGGCAATGGCATATAGATGAATTGTGGAAAGTAGGTAGaaaagagaaagaaagagccAAGAACAGAAGCAGAGAAGAAATGAGTAAAAAGATACTAACACCTTTTAAACAAAGATCCATCGATTACATAGTAAGAGAAGAAACAGTAAGAGATTTAATACGACCTTTATAGAAAAGCATTCCTCTTTAAATGGATAGGTCATTTTTTGATTCAGCTTTTTGCGATGCATTCTGTCTTGCTCTATTTAACACCTCGAGATAAATTCTTAACAGTAGAACAGAGCTTCTTGTATGGTacttaaattttaatttgtagttagctctttttgtatttttaacagcttagggcctgtttatatgggcCAGCCCgcattctcatataaacacaaccaagGTATTATGAAGAATTAAAGCATGAGCCGAGCCATGGCAGGAAAACCTCATATAGAAAGGCCCTTAGTTCTTCAACCTGTTTAATAGCTTTGCCTATACGTTATCACAGACAATAGGCCATTTTTGAATTCAGTTCAGCTTCCTCTTCAAATGGAGTCCTCGTGGAAAGTTTTCATGTGGATGTTAGTTTTGCTTGCATGTTTCACAAAAAGTGTGTACCTAGCCTCGCTTTGATAACAAGACTCAAAACATCTTGACAACGTCAGCAAAATAATGGAACCCACTTTACACTGAACGCAAGATAATCAAATATACTCAAGGCCATTCATTACAATTTTATCTTACGAAAATGTGGTGACGGCAACGAAGAAGGTAAATACTTAAACAACAGTATTTCGCACTCCGTAAAGAAAACCGAGGAGTGATATTTATTCTATCTTTTAAACCATTTATTGAGAAGCATTTTTGTGCCCTTGCAAGAGAGTAGATCGGTTGTACAATTTCAAACCAATGTAACTTCGATAGAGCTTTGTTACCGTtctaatatataatataattaataatatgatataatataatataatataatataattatCATTTGTTAGCACGTTTTTTATCAGTTATGGTATGTATATTGTTTTAATAGTATTTGTTTTTAAACAGTTCCTATCAATTAATATAGTTAGTGTTAGTAATTATTGTAAAGGGAGCCACTATAATCCACAATATTCTGCGCGaattcgcaggataattgttataTGTTTTCACCTTGAATTTTTGCGTTGAGGAACGTATTTAACTTCGATAACTTTCAATGATTGTTGCAAATACTTCGTTTTGCGTTGATAGAAAATTGAATTACTGCAATGTAGGCAATAATGAGGAAAATCTGTGCCTGGAAAAACTGTAAAgaacaaaaaattaacaaatttcCGTTTATGTAAAATAGGTAAAGTATGTATGATATAAAATGACGTGGAACTATGAAAATTGCTCTATAAATTGTGTTCAAAGgaattttgttattttgctGTTTGAAGGGTAATATAAATCTGTTTAGAAAACATTTGTTTGCCTACTTAGCAAATGTTTAGACATCCAGGc

Protein

Uniprot

Uniprot term	Description
Q17RS7	Flap endonuclease GEN homolog 1 OS=Homo sapiens OX=9606 GN=GEN1 PE=1 SV=2
Q8BMI4	Flap endonuclease GEN homolog 1 OS=Mus musculus OX=10090 GN=Gen1 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
--	--	--	--	--

InterPro

InterPro term	Type	Description	Source
IPR006084	Family	XPG/Rad2 endonuclease	Interproscan
IPR008918	Conserved_site	Helix-hairpin-helix motif, class 2	Interproscan
IPR036279	Homologous_superfamily	5'-3' exonuclease, C-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11081	FLAP ENDONUCLEASE FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000400	Molecular Function	four-way junction DNA binding	Interproscan
GO:0017108	Molecular Function	5'-flap endonuclease activity	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan