Gene detail

Detailed information of pspe_0.1.m1.33256.m1 in Pachyseris speciosa

Genomic Location: Sc0000273:365170...375790
NR annotation: XP_029199088.2, NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

pspe_0.1.m1.33256.m1

atggagttatatttgatttcaccatatttacaaaataataaaaaacattatgttatagtttatggtgtttacggattttcaaatatcattttatcacatattcacgatcctgtttttgaaattgaaaatggtaatgttgcattcgatggtaaaattgacatgaataGTAATAAGATCATTAATGTTGCAACTCCAACCGAAGATGATGATGGTGCAAATAAGGTttatgttgatgatgaaatATCCAAGATAGATCTTGATACAAAAGCTGATAAAACTTATGTTGACGCACAAATTGCTTCTGTTTCAAATGTTGTTGATCTTTCTCCAtatcttaaaaaagatggaagtgttttaATGACTGGAAACCTGGACATGGgggaaaacctcatcaccaaaatgggttaccccaaagacattctcgacgccacaaacaaaagctacgttgactctcaaattgcaagctgcttaaaaagggatggaaccGACCCAGCTGAGGGCGATCTAGACATGGATGGGTAcacaattcaaaatttaaaagatgCCGACAACAACACCCCCAGAAGCAACGCAgttaacaaaaagtatgttgatgaccttgttttttcagcatcaggagctcaacgcaacccattcgcttttctgttaaaggacaaatccaagtcttctgcagttagtggtgtggaaaaccttcaaattgagaattttgacagatcaccatatcatataaacaagtcgtcattgtcttttttcatcaaacgaagaggcaactttacatccaaaattcgttttgatgtttcatctttgagtaacagtcagtacacttttgttgttgagttttactcaccatctgacccaagaagtgcaacaatcagtttaacccttccaacaattaacatgcgtgacACTGGACAtacatttcaaaaagcttttccccaaactccacatgttgatggttatataaAAAGACTTTTTACAATTGAAAAAACCggtggtgggcaagcggcaatacaggtggaactttccagcacagctcctgcgtctaacaccaaaacacatatcatcgtttatggggcctatggctatcataccaatttgtcttactttctccatgacccagcttatgaaattgaaaacggccatgttgcatttggtggtaatgttgacatgaaattaaacaaactcatcaacctgcaggataacccctcaaacccgcaagatgctgtaaacaaaagttatgtggaccagaggttgcaaaccaaactcgatacgattgcacagagaaacttgagcatgaacaacaatgccattactgatcttgctccacctgtccaCGCAGACGACGCTGCGACGAAAaaatatactgacgaatattttcttcgaAGTGAAGGTACAAATgcaatgtatggaaatttgaacatgggtggaaatagagtgacgaatttagcggacgtggtgaatgaaactgatgcagtaaACTTTAGAGTTTTGAATCGAGCTTCTCAGACCattagagcaaacactttattattgaatggaacaaatgcgatggcagcagacttaaatctcaatcaaaataaaatcattaacttaaaagaaggaacaaataaaaccgatgccgtaaatttagatcaattagaaaaaagtcatatttcatctgcttctcatccaaagaatgctttcaaatatttgatgaatgatatcgatgaagtcagtactgaatatggcttgacagttaatggatatgtcaatttacctcgttcaccacatttgatttcaaaaaaggtcattgatgtagacctgaataaagaagctaatcatatttacagagctagaattggatttaatatgtatacaataaatgatggaaaatacacttttattcttgaatggctatttcctgattatgaaggaatgaatcttagtagtgtaacattcagcgtaactggtggaattacaattcataaaactgtacggagaaaatttgataacagaaatgaagatcattcgagatatttattatggattgaaaaaccttcagtaagttcaccacctgaatatttatattgtacaatacatattaatgctaacccaacttatccaaataagtacaaagttcattgtgttgcatatggtattgattttgaagctgtagacgttccatcaagtgtttacgacttcgcagaagcttataaaatcgtgaatgaaaaaatacaattacaaactgatttagatttgaatggacatgctttgattaataattcaacaaacttatttgatggtgaaaacggcgaattgacaatgctaaataatattaatatgaacacatttttaataaaagaggctaaacttggttgtgatttaaatctgaatggctatagaattcataacggtggtttaaatctttttcgttcaagtgtcacaggcgtaattatggaaacagctttcgatctcggaggatttgctctctatcggccgaaattaggaggtggaaatccatggaaaaatggtcttattggtcatgataatggaggttatgataaAGAGACAAAAAAACAGTATCCTGATATTGATGACTCTATTTTGAAATCATCTTTGATTTACCAATATCTGTTTCACAAGCACTTCAATGAATTTATCCAAATCAATAGCATCATAGAAACTCACAAGGACATTGGACTCATTGGACCGGGTAGTGGTTGTCTGACATGCTTCTTGGAAtctacacttggttggattgatacattgcaaacacatggtatacttcatgatgcatatggaagattctatagcagttattcattagaccgtggatattgttatgcgACACCTTCTTTGTTCACAtcaaagagaagaaaaggatctccattatgcggccagacaTCTGGAATCCAGATGGGTGGAACAACAAAAGATGGCATGTTTACTCTGAGTTCTGTGGAGTGTTTAGGTGCCTGCGTTAATGCACCTATGATGCAGGTTAATGACAATTATTATGAGGACCTCTCAGCTAAGGATGTTGAAGAAGTTATTGATGGCCTCATAGCTGGAAAAGCTCCAAAAGCAGGGCCCAGgtttttatgcttcatccacccttgtatcaaaagtgctgctgtactgatggctaccaaactaacaccacctgttgccacacttgtggcgagacccccagttgcaaagatgatggacaaggaattccccagtaatttccattttttgaaccgtttaacagcctgtttatga

Transcript

pspe_0.1.m1.33256.m1

Protein

Uniprot

Uniprot term	Description
Q0MQI8	NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial OS=Gorilla gorilla gorilla OX=9595 GN=NDUFV2 PE=2 SV=1
P19404	NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial OS=Homo sapiens OX=9606 GN=NDUFV2 PE=1 SV=2
Q0MQI9	NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial OS=Pan troglodytes OX=9598 GN=NDUFV2 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05662	YadA_stalk	Coiled stalk of trimeric autotransporter adhesin	Motif	Interproscan
PF01257	2Fe-2S_thioredx	Thioredoxin-like [2Fe-2S] ferredoxin	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008635	Domain	Trimeric autotransporter adhesin YadA-like, stalk domain	Interproscan
IPR042128	Domain	NuoE domain	Interproscan
IPR011049	Homologous_superfamily	Serralysin-like metalloprotease, C-terminal	Interproscan
IPR002023	Family	NADH-quinone oxidoreductase subunit E-like	Interproscan
IPR036249	Homologous_superfamily	Thioredoxin-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10371	NADH DEHYDROGENASE UBIQUINONE FLAVOPROTEIN 2, MITOCHONDRIAL	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0019867	Cellular Component	outer membrane	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0003954	Molecular Function	NADH dehydrogenase activity	Interproscan
GO:0005747	Cellular Component	obsolete mitochondrial respiratory chain complex I	Interproscan
GO:0006120	Biological Process	mitochondrial electron transport, NADH to ubiquinone	Interproscan
GO:0045272	Cellular Component	obsolete plasma membrane respiratory chain complex I	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K00366	nirA; ferredoxin-nitrite reductase	EC:1.7.7.1	Nitrogen metabolism	ko00910	deepkoala