Gene detail

Detailed information of pspe_0.1.m1.33294.m1 in Pachyseris speciosa

Genomic Location: Sc0000274:32590...38180
NR annotation: CAH3040878.1, unnamed protein product, partial [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

pspe_0.1.m1.33294.m1

ACTGGATCAACACAACACGTCCGCACGTTCCATCAAATCAACAAAGTTTGGGTTCTTTCAGAGCGATCATCCACTCGTTTGCGTCTTAAAACGAGAATGGAGAAAGTAAAGAGGGGTGCATTCTCCAATACCGCGGTGACCTCATCAGTGTTTCTGTCCATTGCAGTTTGTTTTATTGGACTGATTCATGTTGAGATTTAACTTCGCGCTCAACGAGAAATGCTTCGAGTCATGAATCAACAAGGCGAGGACAAGGTAAAGCTGCCGAATACTGTTCGTTTGTCTAAGACGTTGTACAGTGGCTTGAGTAAAGAAACACAAGTTCGTCGAAAACGCAACTTGGAAAATGCAGACAAAGAAtcaaacacaagtaaaactgTCAAACTTGATGACATCAGGAAAGAAGTTCAACTAGCACTGAGTAGCCTGGCCTGCACGGTATACTGCCGGAAAAGCACCAGGGGAAGACAAGGCAGGCCAGGTCACAGAGGTCCTCCAGGCAAACACGGTCCGCCAGGGCCTCAAGGACTGCAAGGGCCTAAAGGAGAAAAAGGGGCTCAAGGAGATCAGGGTCTCCCTGGACCATAAGGTGATCAGGGCCCACAAGGGCCCAAGGGCGATCCTGGGGAATCCATCTCAGCCCCTTCTATTGTGTCCTCTCCGGTGTCCATGGTGGTAAACGAAACAGGCACAGCCTCATTTCAGTGTGAAGTCAGAGGAAACCCAAAACCGGAGGTGAAGTGGTTAAAAGAGAATTCCAGTTTTCACGCAGGCAAAAGAATAATTAAGTCACGTGGTGCTCTGATGATTACAGATGTAACGTCACAAGACAGCGGAATGTACATATGCAGAGCAAGGAATATCCTTGGTGTGATGTCTTCATCAGCCTCGTTGACTGTTCAAGtCCGTCCCCTGATCACACAAAAGCCCTCGAGTGCCACAGTTGAAGAGGGACATAATGTGAGCCTGATCTGTAAAGCCAATGGTCAACCGAAACCCGTGGTGACCTGGCAAAAAGCGTTCAGAGAAATATCTAGGGACACAACGGAAGTGGCTGATGGTAAATTGACAATATTCAATGCCACAAAAGCAGATAGCGGGGCCTACGCATGCTCAGCAAAAAATATCCTTGGAGAAGACTCCGCTGTCGCTCTAGTGACAGTGACTGACAGACTCAAATTTACCCTCACCCCACAACAAAACGTCTATGCCTCTGTCTACAGCAATGTTAAGTTGGATTGTGCAGCTCAGGGTGTAAGAGAGATTGTTTGGAAAAGAACTGGCCAGAATCCTTCTCAAAACTACCTTCTCTATCCAAATTTTCCAAACGGAACCTTGCTTTTAAGGAACGTCTCGTCTGATGATGCTGGATCTTATACATGCGTTGCGAAAAACTTTCAGCGCTCTATTGTAGCAACAACTGTAGTAGAAGTTCTTCCCATGTCCTGTAGCAGCTTAAAGACTTCTCGCAGTGGATACCCTTCTGGGAATTATTTAATTGATCCTGATGGGGAAGGAGGAGTGTCTCCATTCAGTGTGTACTGTGATATGCGTGACAAGGGTGGGGTTGGTGTGACGGTCATCAGTCAAGACAGTGAGAGTAGAACCCATGTCAATTACATCAATTCCGGATGTACTAGTTCATCAGGGGGATGTTACAGTAAAGACGTGACTTACACTGGTGCCAGTACTGCTCAAATAGCAGCGCTAACTCGAGCGTCACAGAACTGTGAACAGTTTATCAAATATGAGTGCAATCCAAACTCACCTTTTATCGAGAGGAGCTTTGCTTGGTGGGTGTCACGTGATGGAACACGGATGGATTACTGGGGCGGAGCTACTGGTCGTTACAAAATGTGCGCATGCGGAGTAACAAACTCGTGTTTCAAAAGCAGTAGAAAGTGTAACTGTCCCTCCAGTGGAGGTTGGAGTGAGGACAGCGGTCTGCTGACGGACAAATCTGCTCTGCCCGTTTCACAGATTAGACTGGGAGACTTGAATAGCTCGTCTGAGGAAGGTTATCACACGCTAGGGAAACTAAAATGCTACGGTCAAGCATAGGTGACTGACTCACAATTACTTGACGAATGTCTTCAGGACACACAATAGTTTCTGGGATAGTAATAATTACCTTGAAGTCAACATTgtaaaagcaaaagaaaaatgttATCCACTCAGTTTTCACCAACCGAGAGTTCAATATTCGCACTAACAGCTGTTACGATTTCCAAAGCTGATGACGTTGACAATGGCGGTGAGGGTGATGGTGACAGACTGTTGTTAAATAGGAAACAACCTTTGAATTGCTGCGTGATGCGGTACTGTTGCCACTTGACTGTGCAAGGGCTTTGATGCAGTATTTGTGAGCTAAGTTATTCAAGttaatttcaagtttatttcaactctttttacaagtagataattcttggtggactgggccgcaaatagctttagagctaatcgaggcggaccagtccttaaatattactattataaatattaatattattattaatattattactgattcgtcttacgatgacattaaacagaatcaaaaaaatcgcttaacaacatgtaaatattactgtctaggtaaaaTCTAAAGGGAAAAGTTAGAGACcaaaacttgactccagtcggaaattCAATGTTTCATCATGCTAATCAAGGTATCCatctcgacatatgagttttcagattctagtatttcaattagtttt

Protein

Uniprot

Uniprot term	Description
P35331	Neuronal cell adhesion molecule OS=Gallus gallus OX=9031 PE=1 SV=1
Q810U4	Neuronal cell adhesion molecule OS=Mus musculus OX=10090 GN=Nrcam PE=1 SV=2
P97686	Neuronal cell adhesion molecule OS=Rattus norvegicus OX=10116 GN=Nrcam PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13927	Ig_3	Immunoglobulin domain	Domain	Interproscan
PF07679	I-set	Immunoglobulin I-set domain	Domain	Interproscan
PF01410	COLFI	Fibrillar collagen C-terminal domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036056	Homologous_superfamily	Fibrinogen-like, C-terminal	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR013098	Domain	Immunoglobulin I-set	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR000885	Domain	Fibrillar collagen, C-terminal	Interproscan
IPR050958	Family	Cell Adhesion and Cytoskeletal Organization	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR002181	Domain	Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45080	CONTACTIN 5	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005201	Molecular Function	extracellular matrix structural constituent	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0007156	Biological Process	homophilic cell adhesion via plasma membrane adhesion molecules	Interproscan
GO:0008046	Molecular Function	axon guidance receptor activity	Interproscan
GO:0030424	Cellular Component	axon	Interproscan
GO:0043025	Cellular Component	neuronal cell body	Interproscan
GO:0050808	Biological Process	synapse organization	Interproscan