Gene detail

Detailed information of pspe_0.1.m1.33692.m1 in Pachyseris speciosa

Genomic Location: Sc0000280:232559...248109
NR annotation: KAJ7379738.1, Ephrin type-A receptor 5 [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

pspe_0.1.m1.33692.m1

ctgcaatatatcacatattgctgtcggccgaagtaactatctaatatatttactattcaacacccagtgccattgttctctctctgcactaaatcactgattgcaggcgccccttccgctttgttcctgaacgcacaaaagaacataatgagcacttgttgattagctcaattgggaattggtgactgagatgccttgcatcccaataaaagcagtagcgtttgaacatttgattgcgtttcgtgtatgtgttgttgttttcaacatttttcaacaacaagcaggtctctgaactactgcaaaacaacttgcagtctgagaaatgcggcccgttttgcacttatcatatttttttctgtagatgcctttgttttaatagttgatttgtgttgtttgtttttgaccatgtgatgttttccaactagcaggtttgctgaacaattgccactaatcataatttcaatagatctctttgttcttctttgttttccggcaaaccatacggaaacaatagacaattagatataccgtggtatttgcacgtgcagagtaactttttccttcagttgtgaccagacatgaaagaagtgaacgacgatggcttcacatcagacgaggatgaagaggcgatttttagaacacaacaaaagcgaactcgaaatactggcgaagattcacctaaagctggtggtttggagaacgaggCCTGTCCACGTGGAACCTACAATGAAGGAAAGGGACTAAACTGCACTGTCATACCATCAGAGCCAAGGGATGCGTCTGTGTCGTTCGTAAATCAAAGTTCAGCTGTCATAACTTGGTTGCCACCCGCCATCACTGGAACAGAAACAGACGTGCTGTACGATGTGCACTGCCAAAAGTCGTGCACCTATTTTGGGAAGAACTGTGATGACGAAAAATGCGACCGCGGCTTCAGCAACGAAATGGAACAAATAAAGTTGAAAATCACCATGGCAACAATAACGAATCTGGCCTCGTTTGTAAACTACACGTGCAAAATTAGCGCCAAGAACAGAGTCAGTGAGGTGGCTGAGAGAAGTCCGTTCAAAACCACGGCAAAGTTTACGTTAGTAAACCTGAGGACCAGAGAATCTGCTCCTGGTAAACCGGACGTCTTTCTTGACCTGAACAGCGATGCTTCGATTGACGTGTCATGGAAGTTAGACTGCAAAAATGGCATCATCCTGGCGTATTACGTGACCTACACCAGAGTGGATGATCCCCAGGAAACATACATCATCAAAACAACAAACTCGCGCGTGGCTCTGTCCGGACTTAAGCCTGGAAAGAAATATAGTGTAATGGTTGTAGTAGAAAACCACGAAGGACGTAGCTCCAGTAAAATGAAGACAATTGTGGCTAGCGTCATACCATCAGAGCCAAGGGATGCGTCTGTGTCGTTCATAAATCAAAGTTCAGCTGTCATAACTTGGTTGCCACCTCCCATCACTGGAACAGAAACAGATTTACTGTACGATGTGCACTGCCAAAAGTCGTGCACCTATTTTGGGAAGGAATGCGATGACGAAAAATGCGACGGCGGCTTCAGAAACCAAATGGAAAAGAAAGAGTTGAAAATCACCATGGCAACAATAACGAATCTGGCCTCGTTTGTAAACTACACGTGCAAAATTAGCGCCAAGAAAAGAGTCAGTGAGGTGGCTCACGAGATAAGTCCGTTCAAAGGCGTGACAAACTTTACGTTAGTGAACCTGAGGACCAAAGGATCTGCTCCTGGTAAACCGGATGTCTTCCTTGATCGGAGCAACGACGCTACGATTGACGTGTCATGGAATTTAAACTGCAAAAATGGCATCATCCAGGCGTATTACGTGACCTACACCAGAGATGATGATCCTCAGGAAACACAcaccatcaaaacaacaaaatcgcGCGTGGCTCTGTCTGCACTTCAACCTGGAAAGACATATAGTGTAGTGGTGGAAGTAGAAAACCACGTAGGACATAATTCCAGTGATAAGAAGACATTTGTGGCTAGGGGTGATCCCAATTCCAGCAAAACTATTCCAGGCGGTTCCATTTCCAGCCATACTATTTACATTGTCATATCTGTGATACTCGGAGTTCTACTTTTGAGTGTTAGTTAGTTTTGTGTTCTTAGTTAGTTATGTCATGCCTACCCGCCTCGATTAGATACAGCTATTTGCGGGTAGTTACACAATTCtgtaattgtttgtttttaataaacaaAATATTTGCT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00041	fn3	Fibronectin type III domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR036116	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR003961	Domain	Fibronectin type III	Interproscan
IPR050449	Family	Ephrin receptor tyrosine kinases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46877	EPH RECEPTOR A5	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005887	Cellular Component	plasma membrane	Interproscan