Detailed information of pspe_0.1.m1.34261.m1 in Pachyseris speciosa

Genomic Location: Sc0000289:534150...546027
NR annotation: KAJ7385510.1, E3 ubiquitin-protein ligase Mdm2 [Desmophyllum pertusum]
Species Pachyseris speciosa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q2HJ21Protein Mdm4 OS=Bos taurus OX=9913 GN=MDM4 PE=2 SV=1
O15151Protein Mdm4 OS=Homo sapiens OX=9606 GN=MDM4 PE=1 SV=2
Q5XIN1Protein Mdm4 OS=Rattus norvegicus OX=10116 GN=Mdm4 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0006295 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13920
all species →		zf-C3HC4_3Zinc finger, C3HC4 type (RING finger)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR013083
all species →		Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR001876
all species →		DomainZinc finger, RanBP2-typeInterproscan
IPR036443
all species →		Homologous_superfamilyZinc finger, RanBP2-type superfamilyInterproscan
IPR001841
all species →		DomainZinc finger, RING-typeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46858
all species →		OS05G0521000 PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0007049
all species →		Biological Processcell cycleInterproscan
GO:0010468
all species →		Biological Processregulation of gene expressionInterproscan
GO:0016567
all species →		Biological Processprotein ubiquitinationInterproscan
GO:0043066
all species →		Biological Processnegative regulation of apoptotic processInterproscan
GO:0061630
all species →		Molecular Functionubiquitin protein ligase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for pspe_0.1.m1.34261.m1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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