Gene detail

Detailed information of pspe_0.1.m1.34414.m1 in Pachyseris speciosa

Genomic Location: Sc0000292:3467...14295
NR annotation: RMX49572.1, hypothetical protein pdam_00017626, partial [Pocillopora damicornis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

pspe_0.1.m1.34414.m1

TTGGAAGCAAAAGAAAGGGAAATAAAGGAGTTAAAACAGCAACGAGATACTATAACCGAATTAGATAGTCGGCAAGGACGACTCATTCCTGGAAATGAAAACATCGCCGAAGGCGAATGCATTCAAGCAACAAGTACGGCAAATGACGAGGCAATGGATGAAAGATGCAAAAAGATATTGAAAAGTGTCATGGTGGAGTTAGTGAACGACATGGATGCGGAGGAAGTTTTGCTACACATGGCTAAGGCACTCGTGTTTAGTGAGCGGGACGAAGAAAGAATAAAGTCCAAGTCCACACGTCGAGAGAAATGCATAGCGCTGCTAGAAATATTATCAATGAGAGGTGCACAAGCCTATGGTGCCTTCGTTAAAGCACTGGAAGAAGTTCATGAGCATCTTGCGAACATTGTTAGAAAAGCAGAAAGAGTCAACTGACCTGAACCTGAAACTGACCCGAACTTAAACCTGAATCTGACAATACATGAAACCGGAAAAACATTTGGAGATCGGACGAAAAGATTACAGAATGGGCAGGAGAAGGTGTATGTCCGGAACAGGCGTGCATTTCTCACTGACTACCGAGGACATTTCTTGCCCGAGGAGTATTTTCTTGTCGGTTTTCTATACACTGATTCTAGCTTTTTGGGCAAGCTAGCCCAATGCGTTTCTCAATTTCATAATGTACTTTCTaaaaaggtaattaacaatTCTAGAAATCAAATTTCTGGTACTGAACCTAATGCATGGAAAATCGTTTTTCGCCAGACCCGAAACGTTTCCAGGAGTTTCGAGAAAAGCACGTCAGCTTCGAATAAAAAATCGTCGTGACTGGCCAGATTATCGAACAAAGTTGCATtcaacgttccaactttgctcgatccaacacagggagcttaagcaacgacgacggcaacggcaacgaaaacgtcatttgaaaatgtaacttctcgcttttgtaattctttcgcgTTTATTGCACTTTGTCTAACTTGGGGAAACGCGGGAAAGTAGTACCAAATTTAAACGCGAAAGCGAGGCTTGGGGGAAGACCGGCTGAAACAAATGTATGAAAACAAGCTTTGAAGATTAGGGCTTACATACTTATCTTGGTGAAATATGTGCAGCTGCAGTCTGCACTAATAGCGACCACACAAAGGCAAATCTGTcctttttcgtttttcttctgGTATAAAAATTCGTACAAAGTGGGAATGTTTTGAAGAAGAGCCGATGATAAATTCCTTACTCTCGTCGATCCTCGAATCTGTTCTCTGTATTCCCGAAAAGAAGACCTTAAAAAGGAATTCTCGGGATAGATTTCTGCTGTCACAGGAGCTGTTCCCACAATATTTGATCCAGAAAAGTAAGCTCCGTTGCAAAATCTTCGCAAAGAAAGGCATAAAAAGTGGAATCTTGGATTGGAATGATCAGCTGCCAAGGTGGAAAATACGTGTGTAAGTCAGCAAAAGTAAACTGTCGCATGCTGGCAAAATCGCAGGTCCAGCTATGGATGTTAATAGGGTTTGGTATGGTTCCTTTTTCAGCTCTCAGTTTACTTACTATTTCGTCCGACAAGTCTTCCTCGTCTTCATCGATCCATCTTAGTTTCATTTCACTCGCTCTTCGTGTGAGCTCCACAAGTTCAGCTTTTCGTTTACTTCGTCCTTGATCTGATACCTGTATTCCTCGTTTTGTCAAATATTCTTTTAGCCATGGAACGCTTTTACTGATTAAACTGCTCTCCATTTTCGGACTTTTACTGCCCTGAGCTTCATAAGATGATCTCGCTTTTCCTTGATTCAGTTGTTTGCACTATAAGTGTCTTTCGTTTCTCCCGCGCTATTCCCCCAAGCCTCGCTTTCGCATCGATTTTCGTTACCAATCTTCCGCGCCAAAATatatcggaaatgggctattaGATTAGGAGCTGGAGATCTaccgcgtgatagctgatgagggcgcagcctgaatcagctatcacgcatagaaatctccAGCTCATAATGGGCAGATCCGTTTGCAGATGTAGCCTACCATTATTGACCAGCGTATGTTTTGCCgtagtttcaaattttataGACCAGTATGTTTTGTTgtagtttcaaattttataGATTCAGTTAAGGTAATAGAAAAATCTTCTGCCTTTTAAAGGTCGGACCGGGCAGGACACTTGTACATGTCTATGAATCCACAATTCACGAACCAGATATAAAGGGTAGGTGTTTCcgtttcaagcttcaaatctctgaaaaTCGAGAGTCGATTCCACTAAAATTTAACAGGGATTTTAGTGAGTGATACAATTAGATCTTGATTGTCGTTTACCGGCGGATAGTGCTTCGTGATACTTTAGGCTGCTCAAGTGAGAACTGCAGAATTAATCGCaagtttgtgtccgagttttctcaGCATTAAGAAGCGCAGATAAGTAAATGGTTTAATGACATATTAGTACATCACAACCTCTTTTGTAATCTCAAGACtttttgaaagttattggctCTCAATTtgcagagatttgaagcttgaaacaCCCACCTTTTGTTCAGGTCATGAATTATTCACATGCGCGATTTCTTAAGCGAAGTAACATTTCTCAAGCGAAGTTACTCTTCTTCCGACCTGCTACGAAGCTTAGTGCCGCGAGTTGTGCATACAAGACCGTATGCCCTTAGAACAGGAGAATCTGTTTCTGTGCCTGCCTCCTCAAGAACTAACAGATTTGAAAATTTTTGCACCATCAAATACCAGAATCACGTTTAAAATAGCGAAATGTGGTATGTCTTAacattaataattatatttacgTGTCATAATTCCGAGGTATTTGTATTTAATTAAtgtatttgtatgtaattaattaataacccgccttgtaattcagtttatgctgcaaaaaggttgaataaacgatcattattattattattattgtccaGTGCGACCTTAACCCTCGGACGTACAAGCAAACTCATACCCCC

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00619	CARD	Caspase recruitment domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR037939	Family	Death domain-containing protein CRADD	Interproscan
IPR001315	Domain	CARD domain	Interproscan
IPR011029	Homologous_superfamily	Death-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15034	DEATH DOMAIN-CONTAINING PROTEIN CRADD	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0002020	Molecular Function	protease binding	Interproscan
GO:0070513	Molecular Function	death domain binding	Interproscan
GO:0042981	Biological Process	regulation of apoptotic process	Interproscan