Gene detail

Detailed information of pspe_0.1.m1.35542.m1 in Pachyseris speciosa

Genomic Location: Sc0000311:402004...423986
NR annotation: CAH3033981.1, unnamed protein product [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

pspe_0.1.m1.35542.m1

ATTCTCTCTCGGCCTGTCGGAAACAAGATGGCGGCAGGCGGGAGTGAAGCTAACGAAGTAAATGTCATCGTAAAATGGAGTGGAAAAGAATACCTTATCGAGAATATTTCGCTGACAGAAACTGTGCGACACCTGAAGGACCTCATAAGAGAGAAAACTGGTGTTTTACCTGAGAGGCAAAAACTCCTAGGCTTGAAATATAGAGGTAGAAGTCCTGACGATGATGTGCGCCTAAATGCCTTAAATTTGAAACCCAATAATAAGATTATGATGATGGGAACAAGAGAAGAGAACCTGGCCGAGGTAATTTCACCTTCTGAGGAATTGGTAAACAACCAAGTTGTAAATGACTTTGATATAGAAGAAGACGAAGTTCAAATAGAAAACAGAGAAGAGAATCTGGCCAAAATTAACAGAAGGGTGTCAGATTACAAGGTTGAAGTTCGCAATCCTCCAAGGGCTGGAAAGAAACTGCTTGTGCTTGATGTAGATTACACAATATTTGATCATAGGTCAGTTGCAGAGACTGGAGTGGAGCTTATGAGACCATACCTACACGATTTTCTTACAGCATCCTATGAGCATTATGACATTGCTATATGGTCTGCCACCAGTATGAAATGGATTGATGCAAAAATGAAAgAGCTGGGTGTTCTAGACAACCCAAATTACAAGATTGCTTTTCTGTTAGACAGCGGGGCAATGATAACTGTTCTGTCATCAAAGTATGGACTTATTGAGACAAAACCACTCGGTGTTATCTGGGGAAAATTTGAGGAATACGACAACAAAAATACTATCATGTTTGATGATCTCAGAAGGAACTTTCTTATGAATCCACAAAATGGTCTCAAGATCAGACCTTTTCGAGAAGCTCACAAAAATAGACACAGAGACAAGGaacttttaaaattagcaaagTACTTGAAAAAGATTGCTACATTGGATGATTTCAGCAGTTTAAACCACAAGTACTGGGAAAGGTCTGATGTGGATGGCAAATCAGTGCAGCAAAGTTTGAAACAAAGAGAGCTTTTTCtacttgaaaaagaaaaagaaatcaacAAGAAGCTGAAGCTGCTTGGTATAAAAAAATTTGACAATGCATTTGGCAGGGATGACAGCCAAATGCCaacaatttattttattacaccTACCTACAAAAGACTTACTCAAAAGGCTGACTTGACAAGATTGTCGCAAACACTTTTGCACGTACCTAAACTTCACTGGATATTAGTGGAAGACTCCGATCAAAAAACAGATCTTGTAAAGCGCTTTTTGGGAAATTGTGGAGTAAGCTATACTCATCTTAATGTCAGAACTCCTAAACAACTTATTACTAAGGAAGGTGACCCTAGATGGTTGAAGGCAAGAGGCGTTGAGCAGAGGAACTTGGGTCTCAGATGGATAAGGCGCAATTTTAAAGATGGGATGAAAGGAGTTGTTTATTTTGGAGATGATGATAACACTTACGATTTAAAGATATTTGAACAGATGCGTAACACAAAGAAAATCTCTGTTTGGCCAGTTGGTTTGGTTGGAGGGCTGAAATGGGAAGGACCAATCTGCAAAGATGGCTCAGTTGTTAAATTTTACACACTTTGGAAACCTGAGCGCCCAATGCCGGTGGACATGGCAGGATTTGCCATAAATGCAAAACTAATCATTGATAATCCAGATGTAGAGATGGAGACATTTGCTAGTAGAGGCTACTTGGAGTCCTCCATTGTTGGTAGACTGGCGACAAGAAAGGAATTTGAGCCACTTGCAAACAACTGTAAACAGATTCTTGTGTGGCACACTCAAACAGCTGACCCCAAAATGAAGCAAGAAGATAAGCTCAAGAAAATTGGTCAGGGATCAGACCCATCCATGGAGGTGTGAGCCTCCTTTAAACCCTTTTGTTCACTTGTCTCAGCCTCTGATGGTTCTCCTGGCATCACAGTAGTTCTCATGAAGATTTAGCAATTATGTACAAATAGGTTTTATCTACACATACCTACATGTCTAGCTACAAATTTAGACATATACCAACCTCTGGAGATCTGAAATCTGGAAATATCCTTTGTACCAACCCCCATTTTTACCCACTCACCCCTTCCAAATGTAATTTACTCTCTCCCACAAAATCACCCAGCCCCTCCCAACAGCAGTGATAGCAACAATGACAAGCGAGCTCTCTGACAGTGCCACACCCCCAAACACAAAAGCTATGCAGTACACAAAGTCTACTGAAAGGATGACAAGTCAAAGTGAGCCTTGGAGAAAGTAAAAtgagaaatatatttttaaaagcaattAAATACAAACTTATTTTCAATGTCCATTCCactaataaaaagaaaacttgctgtAGTTTACACTTTCAAGTTGTGataatttttgacagaaaaccaGGCGAGAATAAACCTCTAGCACCCAGGGTATTGATGCTGCATTTGGGAAAAGAGGAAAAGAGTTGTGAATGAATGCTGACCATTTAAaatgtgtacatgtacatgttagcCATTTTTTAACACCTCATGTAGTATCGATATTTCTCCGACAAACTTTGTTATTGAATATATTGAGTATTTTGTCTCAATATAtattgaaaatttggtttatcaacagagttgataatataaattgaccactctctgacgaagggctaacgcttgaaatgtcagctttttgaatacGTTTAcgttttcgtgtttcactcccccaccgacgcagcaccacggtttctttaaaaaaactaACCCCTTTAGTTTACTCAGTATCCCGAGGTTACTAATCGAACTGTTGGGTAATCGAACAATTGGGTTCGATTAGTTCGGAAATTGAATAAAGTCAAACCCAAAAATTTGTGTGAGAgttcgattgcgttcgattTCCGAACTCAATTGAACAAAATCGAAAAATCTGAAATTCTCCCTAAATAACCACTAATATCAATTAACTAGTAATATCTTTATTGAAATAACCTTTAGGCGGTGAAATAAATGTTCCTCTGAATATCCAAGTGGAAATGACAAGGATGAAAGccaagcaataaaaaaaaacgttaaacCAAATTGGAG

Protein

Uniprot

Gene family

Uniprot term	Description
Q6DI37	Ubiquitin-like domain-containing CTD phosphatase 1 OS=Danio rerio OX=7955 GN=ublcp1 PE=2 SV=1
Q5ZJJ8	Ubiquitin-like domain-containing CTD phosphatase 1 OS=Gallus gallus OX=9031 GN=UBLCP1 PE=2 SV=1
Q2KJD7	Ubiquitin-like domain-containing CTD phosphatase 1 OS=Bos taurus OX=9913 GN=UBLCP1 PE=2 SV=1

Gene family	Subfamily
Ubiquitin Family	ULD\|UFD/UBQ\|UBQ_PIM

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03031	NIF	NLI interacting factor-like phosphatase	Family	Interproscan
PF00240	ubiquitin	Ubiquitin family	Domain	Interproscan
PF03360	Glyco_transf_43	Glycosyltransferase family 43	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029044	Homologous_superfamily	Nucleotide-diphospho-sugar transferases	Interproscan
IPR004274	Domain	FCP1 homology domain	Interproscan
IPR011943	Domain	HAD-superfamily hydrolase, subfamily IIID	Interproscan
IPR000626	Domain	Ubiquitin-like domain	Interproscan
IPR051658	Family	Ubiquitin-like domain-containing CTD phosphatase 1	Interproscan
IPR029071	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR005027	Family	Glycosyl transferase, family 43	Interproscan
IPR023214	Homologous_superfamily	HAD superfamily	Interproscan
IPR036412	Homologous_superfamily	HAD-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48405	UBIQUITIN-LIKE DOMAIN-CONTAINING CTD PHOSPHATASE 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004721	Molecular Function	phosphoprotein phosphatase activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0004722	Molecular Function	protein serine/threonine phosphatase activity	Interproscan
GO:0006470	Biological Process	protein dephosphorylation	Interproscan
GO:0015018	Molecular Function	galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K17618	UBLCP1; ubiquitin-like domain-containing CTD phosphatase 1	EC:3.1.3.16	Protein phosphatases and associated proteins	ko01009	deepkoala