Gene detail

Detailed information of pspe_0.1.m1.36042.m1 in Pachyseris speciosa

Genomic Location: Sc0000319:129923...145731
NR annotation: CAH3141228.1, unnamed protein product [Pocillopora meandrina]

Gene Structure

More details in Jbrowse

Sequence

CDS

pspe_0.1.m1.36042.m1

TGCTCCAAAAGTACTCATGCATGGAAGAGGCTCCTCACATGCCAAGCACCTCcatcattttgctttcaaatcGTACGATTTCAAAACGATGGGCAAAAACTTGGCAACTTGATAGATTACAAGGAGACAGTGTTATTTCCAGAACACCACAACTCTTCAGATAAAGGAACCACAGTCACTGATGTCCCTTATCAACTGAAAGCTGTCGTTGTGCATGAGGGTACCAAGATCTCCTCTGGTCATTACATTTCTTACTTCAAAAGAGGAGAGAGGTGGTATTTTTCAAGTGATGCTACAATTCGACAGTCTTCAGTTCTTGAAGCTACAAGCCAGGAAGCATATCTCCTTTTCTATGAAAAAAAGGAGGTTGCAGACGTGCAAGAGGTTAGACCTGTTTCTGCAATGCCTGTTAATTCAAAGGTGAACAAATGTCAACCCTGGATGCCCCACAAGTCCCCAAAAGGGAAGATGTTTCTTGTCAAGTCTTGTATTCCACCTGGTTACTACATGTTAAAGGCTGGAACACCAGGAATTTTCAAGACAGCTACTGGAGGTGTACCCTCGAAATATTGCACCCTGGACACAGCAACCATCCGCAAAGcagaggggattgccatggcaGGGGTCCAAATCCCAGTGCATCCTAGAGCTAAACCATGGGAACCAAGTGATATTGAAAAGGTCCTTCCAGATAAGCACATGATAAGTGAAGGCAAACTTTCTAATTTTGTAATGGACTATCTTTTCTTACTGATAGAAAAGCAGTCTCAAGTCAATAACAAGAAAGTTTTTACTGTAAACTCTGACGTTTACAACAACATGACACACTTCTCAATGAATATTTTCTTGAAGCGGAAGTATGACTCACTTTACAAGAATATTCCAACAGCAGACATAATCCTGTGTCCTGTACTGCATGGAGACCATTGGTGCCTGGTTGGCATTGAGGTGAAGGAAAAGAGAATGTGTGTGTTTGTCAGCCAAAGCAAAGAATTACACTGGAAAGAGTGGCAGTATTACATCATTCCATCAACTGAAATTGAACAGCAAAGCAATGCAGTTGACTGTGGTGTCTTTGTTGTCAAATGGGCACAACATATTGCTGAGGGGCGACCACTAGACTTTTCCCAAGAGCAAATTAATGACTTCAGGTATTCACTGATCTTAGACATCGCCAAAGGTGATGACTCCCTTTCCAACTTGGTCACAGAATCTGTTCAAGCAAGTGATGATCGAGCATCTCCTTCTGTGGCATCTTCAAGTCTCTCTGATGATGATaaacgaaagaaaagagaGCATTCTATTGAGCAATCAAGTTCACATATTTCAAATGGCTCCTCCGGTAAGACACCTACACACAGTAGTGATGACCACACATATGCTAAGGATGCTAATGAGGCTGACTTTCATACCAGTAGGGAAGAGATTCCAGAGTGTGCATGTAAAATATTACCATCTGGTTATCAATACAAATGCCATGCATTCAGAGAAATTCCCATGGATAACTTTACAGGTGCACCTCAAGACAATTTTTATGTGAAATTATCTGTAAGTGACATCACAACTAAGGAAGATGTTGATCACTGGCTACAGCAATTTACAGCTTCTTCAAACATAAAATATAATACACAAGGAGGTTACAAACGAAAGGGAGTTAAAGTAATTTATGCACGGTGGTATATTTGCCAATGCAAACgcaaaaaattgacaaaaaaacaaGTCACAGATAAAGAGGCTGcaatgaagagaaaacaaaaaaggcaTGGGACACACAAGGATAACAGTGGCAAGGTAGGGTCTAACTTACACTTATTATCAAAAGCAAGGGAGAAGAAGACAGATTGTGACAGCAAAATGGCCATAAGAatcaacacaaacaaaaaaagtccTCATCTATGTTTAATAGACCTTTGGTGGAACCACAATCACAGTGTGGATTGCTTTCATTTAACTTCATTTTGCCCTATTTTGCCAGCAACAAAAGACAAATTTTATACTTACTTTGAAGAGGGCATGAGTGCCTCAGAAGCATTTCATTATCATGAAACACAATTGATGAAGGATCCAGTAACTCTGATGCTACTGGCTGACCGCAAAATGTGCCTTTCTCTGCgtgatgtaaacaatttgcatgaGAAATGGTTGATTGAAAAGAAGGGACCCTCCAATGGATCTGCAATGTTTGATTGTCTTGAGAAAACGGTCGAGGACTATAACAGCAAAAATGTGGACGTGGGAGGCAAATGTTTCTTGCAAAGGGTGCAAGGGAATGGTGCTGAGCAACAGCATTTGATATTATCTATATGCACCCCTCTCATGTCACGTTTTTGTCGTAACGATATCGAGGCTTTACCATGGTGTCCTCAGAAGAGTGGATGGAATGTACAATTACATGTAGACTTGTTTATTTATCTCGTCTACTTTTTAGTGAagaagttttgttttgaaacggaCACTTTGGCAGGATTTAAGAAATTGCAAGCCTCTTTAATCAATATGGACATTACCAAAGAAGTAGAAAGCGCTTTAGAGGAGGAAGGATATGTAAAAATCGATTCTACATCGCCAAGCACAATCACAACCGCTACATTAACTTCCCCAGTTTCTCCAGCCGAGAAAACACCAAGTTTATCGGCTAGTAGTTTGCTTCAATCTCCGCCTGACAATCGTATAACAAGCCCTACTCAACAGCAAATAAGACCGGACGTTTCTTCGTCGGATATTTCCCCTGGTAAATGCTCTACCAATCCTTCTTCGGGTTCTTCCTCGCTACCAACGTGGCAAGGTCAGACCAGCGAGGGTGATCAGTTTAGTGGAGTATGGGGCTGGATGTCTAGCGCAGTGTCAGCTGGTTTGCAAACGACACAAAATCTTGGGAGGAATATCGTTGAGAAAACCAAGACTTCTGTGGAAAGTGTGATCACAACACTTGACCCAGAAATGGAGGACTATATGCATGGAAGGGATCATTCTATATCTTTGGCAATAACAACAAATGATTCAGAAGCCATTGAGGCAATCAAGGATGGTTTCCGTCAAGTCTTTGAGCATGTTTCCACACAGGCACATTCCTCTGTTTCCAGCATTGCTCCTTTACCTGTGGGATTCTCGGCAGGAGTTAAGGGTGCACAACACAGAACAGTGAACCTAGTGCGAGGAAAGAAGGTTCTTGAAGGACAGGTGATAATTGGTTTGGAGGAAATGGTATCAGAACTTTTACCTGGAAAGTGGTTTGCTTTGACATGTCTTGCCCTCAATGATCCAACCTCAAAGTTAGAACTTGAAACATTCTCACAATCAGTTCACATCCCTAAAGTTTACATCACCAAAGCAGAAGAAAGCACACCATCAAACTATAACTTGAGATGGTCAGGCTTGTCATACACCCTTGGAGAGGTTATTTTAGGATCTGGACAAGCACATGGTGACTGGTACTCTAAAGTCTCAGGTTCTTCCAAAAGACAGATTCTTACATTAGCAGCAAGGACCTTAGCAGGGGAGTTTAAAGACCAATTAAGAGCCAGTGCTGATTCCCTGATGGAGAATGCTTTGGTTATGTAA

Transcript

pspe_0.1.m1.36042.m1

Protein

Uniprot

Gene family

Uniprot term	Description
Q96M27	Protein PRRC1 OS=Homo sapiens OX=9606 GN=PRRC1 PE=1 SV=1
A6H8J1	Protein PRRC1-A OS=Xenopus laevis OX=8355 GN=prrc1-a PE=2 SV=1
Q3T1I4	Protein PRRC1 OS=Rattus norvegicus OX=10116 GN=Prrc1 PE=2 SV=2

Gene family	Subfamily
Ubiquitin Family	DUB\|ULP\|ULP
Ubiquitin Family	DUB\|USP\|USP

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01931	NTPase_I-T	Protein of unknown function DUF84	Family	Interproscan
PF00443	UCH	Ubiquitin carboxyl-terminal hydrolase	Family	Interproscan
PF02902	Peptidase_C48	Ulp1 protease family, C-terminal catalytic domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR028889	Domain	Ubiquitin specific protease domain	Interproscan
IPR029001	Homologous_superfamily	Inosine triphosphate pyrophosphatase-like	Interproscan
IPR003653	Domain	Ulp1 protease family, C-terminal catalytic domain	Interproscan
IPR026533	Domain	Non-canonical purine NTP phosphatase/PRRC1	Interproscan
IPR038765	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR018200	Conserved_site	Ubiquitin specific protease, conserved site	Interproscan
IPR001394	Domain	Peptidase C19, ubiquitin carboxyl-terminal hydrolase	Interproscan
IPR026534	Family	Protein PRRC1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23276	UNCHARACTERIZED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0008234	Molecular Function	cysteine-type peptidase activity	Interproscan
GO:0004843	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0016579	Biological Process	protein deubiquitination	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0034199	Biological Process	activation of protein kinase A activity	Interproscan
GO:0034237	Molecular Function	protein kinase A regulatory subunit binding	Interproscan