Gene detail

Detailed information of pspe_0.1.m1.36315.m1 in Pachyseris speciosa

Genomic Location: Sc0000323:813359...846823
NR annotation: CAH3110648.1, unnamed protein product [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

pspe_0.1.m1.36315.m1

ATGGCTGACAGCGATAACCGATCTGTGTACACGATCAGTGGGGTCAAAGTTGTCTTTCCATGCAAGGCTTATCCGACACAGCTATCAATGATGAATATGATTATCAAAGGCATTGAAAGGCATCAGAATTCTCTCTTGGAAAGTCCAACAGGAAGTGGAAAGAGCCTGGCTTTGCTGTGTTCTTGTTTGGCATGGCAGACAGCAGAATATGAAAAGAAGGCAAAACTTGAAGAGGAACAAAATGCAGCTAAAGCATCTGCAGATGATAGATGTTGTGACAAAGCATGTGGTCCTGAAGACAGGCCTCTTCCAACAGACCCAGAAATTCACTTCAAGAGTGAATACTTCCAGCATAACAATACCAGTCATGCAGGTGGAAGTggtacagcaaccccactgaaaACAGAATCAGTGGATTCTACTGAGCAGACTTCAGAAATAGCTGTGTCTTTTGTTGGGAATGATGGATCTGGAAGTCCCACAGATAATGACTTCCAGCCACCTAAGAAGCGATTCAGGACTCCAGGACAACAGGTAGTGCCATCTAAAAAAAGGCGTATTCAGACACCCTCTGGAATCTCTTATGACGATGACTCAAATTGTGATCCTCCGGAATGGAAAATGGAGTTAACTAGAGATGGAGCAGGAGAAAACAAGTCTCCACATGCCGTGGATACCAGTGCAAATAAGGAAAGCTGCTGTTCTGATGATGGtgggaaaaacgatggaaaatcAGGGACAATAAGGGTTCCCAAAATCTTCTTTGGCACGAGAACACACAAACAAATAGCGCAGATTTCAAGGGAACTTAGAAAGACTGAATACAAGAGAGTGAGGATGACCATACTGTCCAGTCGAGAGCACTCCTGTGTTCACCCAACAGTTTCAAAAGGAAAGAATAAGAATGAGGAATGTAGGAAGCTATTGGATGGCTCAGTGGGTGCAACATGCCGGTTTTACCAGAAGGTTCACACCATCAAAAGCCAGACAAGTTTGAAACACCATGGTCTTAATGAAGCCTGGGATGTTGAGGACTTAGTCACACTTGGAGGTCAAATCAAGGCCTGCCCATATTATGCTGCAAGGGAACTAATGAAAGAAGCAGATATAATCTTCTGTCCTTATAACTATCTTATTGATCCCAAAATCAGATTACAGATGGATATTAACCTCACCAATCAGATTGTAGTTTTGGATGAAGCACACAATGTGGAGGACTCAGCTAGAGAGGCAGCCAGTCTCACACTGACAGCTGTATTAACAGAGCACCACAGAGCACTTCATTTTATGgtTGGGAGCTTTTCACAGTGGATACATGAAAGCTCCTCACAGTTGAAAGAGAGAGCCTTTGAGCAGTCATCTAAGGTCTGGTCTGGCATGGAGATTGTAGCAGCTATggagaagcaaggaatcacacCTGGAACTTTCTACCTTCATTGTGAACACTTTCAGTTTGTGATGGCAGCAGCAAAAGATCCAAGCAGACAAGGCATGCCATGTCTGTCATCTCACAGTAGTTCTCTCCTAGAGGGAATATTTCTGATTGGGAGATTCATGATGGGGAACGATATGCATTATATTTCTGATTACAGATGTGCCATACTGAAAACATCTGTCATGGTTAGAGATGTGCAAGTCTTGGCCTTTTCTGAGCTTGGTTCCCAGGCCCGCTGTATCATCCTGACTTCTGGGACACTGTCACCCATGGCATCATTTTCTTCTGAACTAGGGGTGAAATTCCCAATCCAGTTGGAAGCTAATCATGTTATTGCCAATTCACAGGTGTGGGTCGGGACCTTGTCAACAGGGCCAAGTGGATCAGCTATCAACGCTAGTTTTCAAAGTTCCGAGACCTTCACCTTTCAAGATGAAGTTGGCAAGGTGGTGCTGAACATTTGCGAGGCAACAGGTTTATGGTCAAGGATCTTGGACAGGAAAACAATCGTCAGTGAACCACGGAGTGGAGACAAATTAGagtttgatGACGTAATGCACCAATTCTACCACGCCGTGAGAACCAGCGAGGATGAGGAAAGCGCAGAAACAGATTCGGATGATGAATCGTGTGTTGATGGAGGATTGTTCCTGGCGGTTTGCAGAGGGAAAGTAAGCGAAGGACTTGATTTTGCTGATAACAACGCCAGGGCAGTCATTACGGTCTCTGTCATGGTGCCTCTTTATGTTCCAAGATGTGAGGTTTAA

Transcript

pspe_0.1.m1.36315.m1

CTTGGCACTAGTTGGAGTTCTGGCGGTGCGCGCGGGAAAAGGGAGTTGGTCGTTTGTACGACGAAATGAACGCCGATTTCGCCAAATTTCGCTACATTCGTAAGCTGTCACTCTGAGGTTAGTTCGTACTTTGATCAAATTTACCCCTCATTGCATATTCTCGTTAAAAGATTCGAAGTGAAAACATGGCTGACAGCGATAACCGATCTGTGTACACGATCAGTGGGGTCAAAGTTGTCTTTCCATGCAAGGCTTATCCGACACAGCTATCAATGATGAATATGATTATCAAAGGCATTGAAAGGCATCAGAATTCTCTCTTGGAAAGTCCAACAGGAAGTGGAAAGAGCCTGGCTTTGCTGTGTTCTTGTTTGGCATGGCAGACAGCAGAATATGAAAAGAAGGCAAAACTTGAAGAGGAACAAAATGCAGCTAAAGCATCTGCAGATGATAGATGTTGTGACAAAGCATGTGGTCCTGAAGACAGGCCTCTTCCAACAGACCCAGAAATTCACTTCAAGAGTGAATACTTCCAGCATAACAATACCAGTCATGCAGGTGGAAGTggtacagcaaccccactgaaaACAGAATCAGTGGATTCTACTGAGCAGACTTCAGAAATAGCTGTGTCTTTTGTTGGGAATGATGGATCTGGAAGTCCCACAGATAATGACTTCCAGCCACCTAAGAAGCGATTCAGGACTCCAGGACAACAGGTAGTGCCATCTAAAAAAAGGCGTATTCAGACACCCTCTGGAATCTCTTATGACGATGACTCAAATTGTGATCCTCCGGAATGGAAAATGGAGTTAACTAGAGATGGAGCAGGAGAAAACAAGTCTCCACATGCCGTGGATACCAGTGCAAATAAGGAAAGCTGCTGTTCTGATGATGGtgggaaaaacgatggaaaatcAGGGACAATAAGGGTTCCCAAAATCTTCTTTGGCACGAGAACACACAAACAAATAGCGCAGATTTCAAGGGAACTTAGAAAGACTGAATACAAGAGAGTGAGGATGACCATACTGTCCAGTCGAGAGCACTCCTGTGTTCACCCAACAGTTTCAAAAGGAAAGAATAAGAATGAGGAATGTAGGAAGCTATTGGATGGCTCAGTGGGTGCAACATGCCGGTTTTACCAGAAGGTTCACACCATCAAAAGCCAGACAAGTTTGAAACACCATGGTCTTAATGAAGCCTGGGATGTTGAGGACTTAGTCACACTTGGAGGTCAAATCAAGGCCTGCCCATATTATGCTGCAAGGGAACTAATGAAAGAAGCAGATATAATCTTCTGTCCTTATAACTATCTTATTGATCCCAAAATCAGATTACAGATGGATATTAACCTCACCAATCAGATTGTAGTTTTGGATGAAGCACACAATGTGGAGGACTCAGCTAGAGAGGCAGCCAGTCTCACACTGACAGCTGTATTAACAGAGCACCACAGAGCACTTCATTTTATGgtTGGGAGCTTTTCACAGTGGATACATGAAAGCTCCTCACAGTTGAAAGAGAGAGCCTTTGAGCAGTCATCTAAGGTCTGGTCTGGCATGGAGATTGTAGCAGCTATggagaagcaaggaatcacacCTGGAACTTTCTACCTTCATTGTGAACACTTTCAGTTTGTGATGGCAGCAGCAAAAGATCCAAGCAGACAAGGCATGCCATGTCTGTCATCTCACAGTAGTTCTCTCCTAGAGGGAATATTTCTGATTGGGAGATTCATGATGGGGAACGATATGCATTATATTTCTGATTACAGATGTGCCATACTGAAAACATCTGTCATGGTTAGAGATGTGCAAGTCTTGGCCTTTTCTGAGCTTGGTTCCCAGGCCCGCTGTATCATCCTGACTTCTGGGACACTGTCACCCATGGCATCATTTTCTTCTGAACTAGGGGTGAAATTCCCAATCCAGTTGGAAGCTAATCATGTTATTGCCAATTCACAGGTGTGGGTCGGGACCTTGTCAACAGGGCCAAGTGGATCAGCTATCAACGCTAGTTTTCAAAGTTCCGAGACCTTCACCTTTCAAGATGAAGTTGGCAAGGTGGTGCTGAACATTTGCGAGGCAACAGGTTTATGGTCAAGGATCTTGGACAGGAAAACAATCGTCAGTGAACCACGGAGTGGAGACAAATTAGagtttgatGACGTAATGCACCAATTCTACCACGCCGTGAGAACCAGCGAGGATGAGGAAAGCGCAGAAACAGATTCGGATGATGAATCGTGTGTTGATGGAGGATTGTTCCTGGCGGTTTGCAGAGGGAAAGTAAGCGAAGGACTTGATTTTGCTGATAACAACGCCAGGGCAGTCATTACGGTCTCTGTCATGGTGCCTCTTTATGTTCCAAGATGTGAGGTTTAATGTTCTGAGTTTGCAGTTTTTGTTGCGCACTGCCTTGCATAGGTCAGGAACTACAACCGCGGTGATGCGGTTACTTAATAGCTCCAAGAAGGTGAGCTT

Protein

Uniprot

Uniprot term	Description
A0A8J1M587	Fanconi anemia group J protein homolog OS=Xenopus laevis OX=8355 GN=brip1.L PE=3 SV=2
Q5SXJ3	Fanconi anemia group J protein homolog OS=Mus musculus OX=10090 GN=Brip1 PE=2 SV=1
Q3YK19	Fanconi anemia group J protein homolog OS=Gallus gallus OX=9031 GN=BRIP1 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06733	DEAD_2	DEAD_2	Family	Interproscan
PF13307	Helicase_C_2	Helicase C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045028	Family	Helicase superfamily 1/2, DinG/Rad3-like	Interproscan
IPR006554	Domain	Helicase-like, DEXD box c2 type	Interproscan
IPR010614	Domain	RAD3-like helicase, DEAD	Interproscan
IPR014013	Domain	Helicase superfamily 1/2, ATP-binding domain, DinG/Rad3-type	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR006555	Domain	ATP-dependent helicase, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11472	DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003678	Molecular Function	DNA helicase activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006289	Biological Process	nucleotide-excision repair	Interproscan
GO:1990918	Biological Process	double-strand break repair involved in meiotic recombination	Interproscan
GO:0016818	Molecular Function	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0004386	Molecular Function	helicase activity	Interproscan
GO:0006139	Biological Process	nucleobase-containing compound metabolic process	Interproscan