Gene detail

Detailed information of pspe_0.1.m1.36557.m1 in Pachyseris speciosa

Genomic Location: Sc0000328:15927...21474
NR annotation: XP_029201585.2, sonic hedgehog protein-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

pspe_0.1.m1.36557.m1

AGTGGCTGTGGTTGCGGACTTTAACCAACACGAAAACTTTATCACCAGGGGTCCGGGGATGACGAAGAAGCCCGAAGGCTACAGAACTCGATCGAGAGAACGAACAAGCCTGATCAGTTTTGCAATGTAGAAGTATTTGCTGAGTTGCTCCGATTGATTGCAAAGGTCGAAAATATCATCCATTATTCAATTGACAAGCGTTACCAACCCAACGGCCTGATTCAGTTAGAAATACGCAAGATGCGACACCACCAAAACGCGCACCCGTCTACAATGTGGCGTGCCCTTCCCGTCCTTTCTAAATTCCACGCGGTTCTTGTGATGGTGATCTGTGCTTCTGGATTTTCGACGGCGTGCGGACCCGGCACAATTGGCACCCAGACCAGAAAAAATACAACCCCAATGAAGTTGAGACAGAGCTTGCCTGACTTACCGGAAACGTCCCTTGGTGCCAGTGGACAGTACGTCGAACGGGTCCGGCGAGGAAGCGAAGCTTACAAAGCGCTGGAACTAAACTATAACCCTGATATTGTGTTTAAGGCTGATGAAAAATACAGAGACGAAACAAGGCGGATGACCAAGAATTGTTTCAAGAAGCTCAACAGGTTAGCAGAAGATGTGAAGAGAACATGGGGCTCAAAAGGCGTAAAGCTACGAGTCATCGACGCTTTTGATCTTGATGATGTTAaaaaacggcacggtgaaaATTCGCTTCACCACGAGGGGCGAGCGGTCGATCTGACAACTTCGGACAAGGATAAAAGCAAGTATCCTATTTTGGGAAGAATGGCCTATGAAGCAGGATTCAACTGGGTGTATTATGCAGGCAAAGGCTACATTCACGCTTCTGTTAAAACAGACAAAGATGCAGAAGAACAACCAGTTTCATGCTTTCCAGAAAGCGCGTCAGTACGTCTAGAGGGAGGACagacaaaaacaatgaaagatCTGCAAATTGGAGACAAGGTCGCCAGCATGGATTCCAGTGGCAAAATTGTTTACAGCAAAGTCCTGACTTTTCTAGACATCAAGCGGAACATGTCCACCGAGTTCGTTACTATACAAACAAAAAGCCCCGCTGCTCAAGTAACAATCACGGAATTTCACTTGATCTATCAACTAAACAAACAAGCGCTGCGGGAAAGCGCGGTGTTTGCGCGAGACCTGAAGGTCGGGGACTTCGTTTATGTGCGAAAAAATAGATCCTCGTTTGACAGATTTACAGCTGGACGGGTAGTGGCTATCAAACGGCGCCAAGGCAGGGGTGCATATGCCCCCCTCACCGAGACAGGTAACATTGTGGTGGACGATGTTTTGTGCTCGTGTTACGCTGTGATTTCCGATCCTCGTATCGCTCACTGGAGCTTTGCTCCGATACGATTCTCAGAGTGGCTGTTCCCGGGTATCGCTTCACACAACAAAGCAGGGATGCACTGGTACGCTCAAATACTTTACAAGCTGTACACGAGTTGGAATTACGTTTATGAAAAAGTTTTTGACAGTTCGTAGGGTACGCTAACTTTAATCAGATCTTGCGGTCGCGGTTTAGTTGACTAAAGCGTTCGTggaatttgcatttgtaagtgCGACCCGCTTCACTTCACAGCAGAACATGACAGAAACAGCACAGAAGGCTGTTTAACCGCATATGACGGAAAAACTCGAGAAATTGATCAAAGGAAACTCCTGTGAGATAACATATCTGTAGAGATAAGACTTAGTTGCTGGATTCGGCGAAATTTTCGCTGGAAAGCCAACATTGGTTTTAAGGTATTAATTAAGTGATATTATTGAATATGACTGATACATGCAATGTTAATTAGACTAATTAAGATCGCTCATTGCCACCCAGCGTACTTCACTGACGGTTCTTTAGCAACCTGTCACGTTAGCAAGAACCCCATGGGGACTGTATCATGGCAGGGGACTACTGGTGATGCATAAACAAAGCGTAGTGTGGCTCGGTTTAATACCGCTCGCTTTCTTGCCGAAGTCTCGATTCTTTCCAGTTTAGAAAGTTCCAATTTTGTTTTCGCTTTATTCTCGCCTTAAAACTTTACCATTTGTATCATTGTGCCCAACAAGCAAGGTTAATGTCCTATTAATACATCTAGAAACAACTGGATGTTAAAAGGTCTTCTATTTGCAGACAAATAGTTTGTCTCTGTCAAAATGTTCAATTCCTCGATTAATCAAATGCGCATCACGAGAGCCCTCACGGCTGGAAAGAGACcgaaaataaactttgttttgCTTATGCCGCGAAAAATACCTTGGATGGCCATAC

Protein

Uniprot

Uniprot term	Description
Q91035	Sonic hedgehog protein OS=Gallus gallus OX=9031 GN=SHH PE=1 SV=1
Q90419	Tiggy-winkle hedgehog protein OS=Danio rerio OX=7955 GN=shhb PE=1 SV=1
P79691	Sonic hedgehog protein OS=Carassius auratus OX=7957 GN=shha PE=3 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01085	HH_signal	Hedgehog amino-terminal signalling domain	Domain	Interproscan
PF01079	Hint	Hint module	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003587	Domain	Hint domain N-terminal	Interproscan
IPR009045	Homologous_superfamily	Hedgehog signalling/DD-peptidase zinc-binding domain superfamily	Interproscan
IPR050387	Family	Hedgehog Signaling	Interproscan
IPR000320	Domain	Hedgehog, N-terminal signalling domain	Interproscan
IPR001657	Family	Hedgehog protein	Interproscan
IPR003586	Domain	Hint domain C-terminal	Interproscan
IPR001767	Domain	Hedgehog protein, Hint domain	Interproscan
IPR036844	Homologous_superfamily	Hint domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11889	HEDGEHOG	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001708	Biological Process	cell fate specification	Interproscan
GO:0005113	Molecular Function	patched binding	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005615	Cellular Component	extracellular space	Interproscan
GO:0007224	Biological Process	smoothened signaling pathway	Interproscan
GO:0010468	Biological Process	regulation of gene expression	Interproscan
GO:0007267	Biological Process	cell-cell signaling	Interproscan
GO:0007275	Biological Process	multicellular organism development	Interproscan
GO:0016540	Biological Process	protein autoprocessing	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11988	SHH; sonic hedgehog	-	Glycosaminoglycan binding proteins	ko00536	deepkoala