Gene detail

Detailed information of pspe_0.1.m1.36576.m1 in Pachyseris speciosa

Genomic Location: Sc0000328:316178...326438
NR annotation: CAH3177345.1, unnamed protein product [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

pspe_0.1.m1.36576.m1

ATGGGCATTTCGGATCGACTCTCTGAAGGGGAACTCGTCAAAATGAAGTTTGGCGTCCAGTTACCCAAAGGGAAATTACAAGGTATTCAAAAGCCGTTTGAGCTCTTCGATCTCATGATGGAGGCCGGATTGTTTTCTGCAGACAACCTCAATCCTCTGGCTGAATTGTTAGAATTTGCGGGTCGTACTGATTTGAGCCATGAGCTGATAAGTAGCACAGAAACGAGCCATTCTCAGCCAACATCACCATCCCCACCACAAGAAGGAGTTTCAGAGCTAAGTTGGTTTCATGAAAGGCCGTGTTATGCAGGAGCTTTGCCGTACAAACCAGCCTATTTCTATGGGAGAGACAAACATTTGGAAGAAATCGTTGAGGTGCTGAGAGGTACCAATGGCAAACGCCTCGTGCATATAACCGGTTTACCAGGTTATGGAAAATCCTGTTTGGCGCAGAGCGTTGGTCACGTGATGGCTGaggatggttttcaagtcaTTTTTCTTTGCTTGAGAGAAATCAGATGCATTTCCAAAATGTGTGCTAACATTTTAATAGCACTGAAACCAAACATGTGCCACAGTTTGGCGAGGAAACAGCGTGAATTGGTGTTGAAGCTGTTGAGTGAAACATCGAAGGCTATCCTTATCCTTGATAACGCTGAGGACATTCTCAATGAACCAGAAGAAAGCAAAGAATTTTACGGCTTTCTCAATCACCTGGCCAAGTTTGCTGGTGGTGTGAAATGCGTCATCACATCACGTGTTTTTTGCCCAGCTCCTTGGCAAATCTTGCACCACCCCGTCAAACTTCTCGAGCTAACCAACAAGGACGCAGCTAAGCTCCTCCAAGCCAAGCTCCAGAGCGCCAACATTACCTTAAAGGATGATGAAGCCAAAACTATCGCAGACCTATGCTTGAATATTCCTCTAATATTGCACGCGGCAGCGGCTTATATGGAAAATGTATGTGACACCGAGACACTGATACCGATTTTACAAAAACATTTTACCCCTCTAGAATTGGCAAACATGGAAGAGCTCTCACCGGATTTAAGAATGAAGAGCTTTCTATTTGATTGTTTACAGCACCTCGACCATGAAGTGGAGAAGGCTTTAGTGTCGTTAGCTGTGTTTCCAGCCGCTTTTCACCGCGATCAGGTCTTTATAGTGTTTGGTTTGCAGCAAACTGAAATCCAACTTAACAGGACTTTATTACAGCTGATGAAACGATCTCTTATTCACAGAGACGTGGAGTCTAAACAGTACTTTGTTCATCGGTTAATCCAGCTTTGCTGTGAAGAGAAGGCCCGGGAAGACGAAAGGTTGCGTTTGTCTTACACCCAAGCAAGAGAGAGATTTGTTAACCACTATTTGTCCCTGGTCACTGAGCTTCATCAGCGTTTCTTATGCAAACACGCTTTAAAGGAAGCAATTTGCGATTACTGGCAAGAAGAACAGCACATCATTCAGGCAATCTTCTGGGCAACAGAAAGTGATACAAGGATGGCAGCAAAGTGCGCGCAAGTTCTCAACGAAGCTGTCGTTTTCTTAGCCAAAGTCATGAAGAAAAGCGACTTTGAGGCGGTTTACAAGGTCATGTTACATGCCAACAGAGGTGAAGCACGTCTTCTAGCGGATTGTCTGACGTGCGTCGGAATAAGGCTTATTTATTCCTGTGAGTGTCACCGAACCTGCAGCGTGGTTTCAGAAGAGAGCTATCGAGTGCTGAAGAAAGCCATGGAAATGTACGAGCAGCTGGGTGTCATAGAAGGAGAGCTGGTCGCTCAGTGTTACAGCAAACTCGCGCGTTGCATGGCGAAAAATGATGGCCGAACAACCGCTCTGGAGTTGAGTGGCAAAGCTCTAGAGATCAGAGAAAAGACGAAAGAAAAGGAACCTTTCAAGTATGCGGCTTGCTGCAATGATAGAGCAGTTGTTCTCAGCGCTTTAAACAGTCACGAAGAAGCCCTGAGCCTCAGAGAAAACGCGCTCAGTGTCTACGTTGAACAACTAGATAACCATCCGTTCACAGGGACACTCTACAACTACTTGGGCAATGATTGTTTGGCACTGGGATACTTTGACAAAGCCGTGGAGCATTTTTCCGTGGCGCTGAGAATCCGGAAGAGTTTCTTGGGAGACTGTCACCAAGAAACTGCGAGAACGCTGCACGATTTGGGTGTCGCTTACAAAATGAAGggAGAGTACGAAAATGCCATGACCCAGCTAGACGAAGCAGTAAAGGTCCAAGAGGCGCTGTGTGACGTTCCACACGAGAAACTGAAGTCCCTTCAAGAGGCGTTAGAAATCTGCGTTCAACTGAATGCCCCTGAAGACAGCATAAGAGATCTTCAACAGAAGATTCAG

Transcript

pspe_0.1.m1.36576.m1

GCGCCTGATGGGCATTTCGGATCGACTCTCTGAAGGGGAACTCGTCAAAATGAAGTTTGGCGTCCAGTTACCCAAAGGGAAATTACAAGGTATTCAAAAGCCGTTTGAGCTCTTCGATCTCATGATGGAGGCCGGATTGTTTTCTGCAGACAACCTCAATCCTCTGGCTGAATTGTTAGAATTTGCGGGTCGTACTGATTTGAGCCATGAGCTGATAAGTAGCACAGAAACGAGCCATTCTCAGCCAACATCACCATCCCCACCACAAGAAGGAGTTTCAGAGCTAAGTTGGTTTCATGAAAGGCCGTGTTATGCAGGAGCTTTGCCGTACAAACCAGCCTATTTCTATGGGAGAGACAAACATTTGGAAGAAATCGTTGAGGTGCTGAGAGGTACCAATGGCAAACGCCTCGTGCATATAACCGGTTTACCAGGTTATGGAAAATCCTGTTTGGCGCAGAGCGTTGGTCACGTGATGGCTGaggatggttttcaagtcaTTTTTCTTTGCTTGAGAGAAATCAGATGCATTTCCAAAATGTGTGCTAACATTTTAATAGCACTGAAACCAAACATGTGCCACAGTTTGGCGAGGAAACAGCGTGAATTGGTGTTGAAGCTGTTGAGTGAAACATCGAAGGCTATCCTTATCCTTGATAACGCTGAGGACATTCTCAATGAACCAGAAGAAAGCAAAGAATTTTACGGCTTTCTCAATCACCTGGCCAAGTTTGCTGGTGGTGTGAAATGCGTCATCACATCACGTGTTTTTTGCCCAGCTCCTTGGCAAATCTTGCACCACCCCGTCAAACTTCTCGAGCTAACCAACAAGGACGCAGCTAAGCTCCTCCAAGCCAAGCTCCAGAGCGCCAACATTACCTTAAAGGATGATGAAGCCAAAACTATCGCAGACCTATGCTTGAATATTCCTCTAATATTGCACGCGGCAGCGGCTTATATGGAAAATGTATGTGACACCGAGACACTGATACCGATTTTACAAAAACATTTTACCCCTCTAGAATTGGCAAACATGGAAGAGCTCTCACCGGATTTAAGAATGAAGAGCTTTCTATTTGATTGTTTACAGCACCTCGACCATGAAGTGGAGAAGGCTTTAGTGTCGTTAGCTGTGTTTCCAGCCGCTTTTCACCGCGATCAGGTCTTTATAGTGTTTGGTTTGCAGCAAACTGAAATCCAACTTAACAGGACTTTATTACAGCTGATGAAACGATCTCTTATTCACAGAGACGTGGAGTCTAAACAGTACTTTGTTCATCGGTTAATCCAGCTTTGCTGTGAAGAGAAGGCCCGGGAAGACGAAAGGTTGCGTTTGTCTTACACCCAAGCAAGAGAGAGATTTGTTAACCACTATTTGTCCCTGGTCACTGAGCTTCATCAGCGTTTCTTATGCAAACACGCTTTAAAGGAAGCAATTTGCGATTACTGGCAAGAAGAACAGCACATCATTCAGGCAATCTTCTGGGCAACAGAAAGTGATACAAGGATGGCAGCAAAGTGCGCGCAAGTTCTCAACGAAGCTGTCGTTTTCTTAGCCAAAGTCATGAAGAAAAGCGACTTTGAGGCGGTTTACAAGGTCATGTTACATGCCAACAGAGGTGAAGCACGTCTTCTAGCGGATTGTCTGACGTGCGTCGGAATAAGGCTTATTTATTCCTGTGAGTGTCACCGAACCTGCAGCGTGGTTTCAGAAGAGAGCTATCGAGTGCTGAAGAAAGCCATGGAAATGTACGAGCAGCTGGGTGTCATAGAAGGAGAGCTGGTCGCTCAGTGTTACAGCAAACTCGCGCGTTGCATGGCGAAAAATGATGGCCGAACAACCGCTCTGGAGTTGAGTGGCAAAGCTCTAGAGATCAGAGAAAAGACGAAAGAAAAGGAACCTTTCAAGTATGCGGCTTGCTGCAATGATAGAGCAGTTGTTCTCAGCGCTTTAAACAGTCACGAAGAAGCCCTGAGCCTCAGAGAAAACGCGCTCAGTGTCTACGTTGAACAACTAGATAACCATCCGTTCACAGGGACACTCTACAACTACTTGGGCAATGATTGTTTGGCACTGGGATACTTTGACAAAGCCGTGGAGCATTTTTCCGTGGCGCTGAGAATCCGGAAGAGTTTCTTGGGAGACTGTCACCAAGAAACTGCGAGAACGCTGCACGATTTGGGTGTCGCTTACAAAATGAAGggAGAGTACGAAAATGCCATGACCCAGCTAGACGAAGCAGTAAAGGTCCAAGAGGCGCTGTGTGACGTTCCACACGAGAAACTGAAGTCCCTTCAAGAGGCGTTAGAAATCTGCGTTCAACTGAATGCCCCTGAAGACAGCATAAGAGATCTTCAACAGAAGATTCAG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13374	TPR_10	Tetratricopeptide repeat	Repeat	Interproscan
PF13424	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan
PF05729	NACHT	NACHT domain	Domain	Interproscan
PF01335	DED	Death effector domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR011029	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR001875	Domain	Death effector domain	Interproscan
IPR007111	Domain	NACHT nucleoside triphosphatase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47691	REGULATOR-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0042981	Biological Process	regulation of apoptotic process	Interproscan