Gene detail

Detailed information of pspe_0.1.m1.37365.m1 in Pachyseris speciosa

Genomic Location: Sc0000342:376126...394871
NR annotation: CAH3014015.1, unnamed protein product [Porites evermanni]
Species abbreviation PSPEC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

pspe_0.1.m1.37365.m1

CTCAGAGTTCAACAGCACTGCAGGATTTGATGTACTCTGTAAGCGCTTGAGAGATGGCAAACAGATGTGCCAAGATTTTGAAGAGTTTGTCAGGCAAAGAGCTGATGCAGAGGAAAAGTATGGTAAGGCCTTGATGAGAATGGCTGAGAGTGCCAAAGGCAAGGAAGAAATAGGGACACTCAAAGAATCATGGGATGTGCTAAAAACAGAGACAGAAAATATTGGCAAAGCTCACATTTCTTTGGCTCATCAGCTTATCGAGCAGTTGGAACAATGTGTCAAGGATTTTAGGGAAACACAacgtgaaaaaagaaaaagggtTGAAGACTCAGTGAAAAGATCACAAAGGAATAAGAGGAACTGCTTTGACAATACTTTAAGGAATAAAAAGAACTACGAGCAGAGGTGTCGTGAGGTAGACACTGCAGAGGATGCACTCAGAAAATCAGTGGCACTTGTCAGCAAAGATGAAGAAAAGCTGAGATCAAAACTTGGAAGAGCAAAAACAACGGTGGAACAAGCAGacaCAGCTTATCAGAATTCAGTGCGCATGCTTGAAGATGCACGAGTTGTTTGGGAAAAGGAGATGGAACAATGTTGCGATGTTTTCCAGAGTCTGGAGGAAGAAAGGATTGCGTTTTTACGGAATGCCATGTGGGTGTACACTAACGTAACCTCGCTGAATTGCGTTAAAGTGGATGAGATTTGCGAGGAGGTGAGGAAAAGTCTTGAACTGTGTACAGTGGAGTCAGACATTCATCTGTTTATCAGCATGAAGCAGACTGGATCAGAGCGACCAGCTCGGATAGAATATGAAAATTTTTACATGTCGCAGTCGTCGCAGAAACTTATGCCACCAAGCAGCGGCTTTAATATCAGTGTTCCAATGCCAGGGACTTTTCAACATTCGAAAGAAACTACTATGGCTCAACCGACGACCAAACCAGCGATCCGGCGACCACAGATTCCAATTCCCAACATTCCAGCTCAAGCACCGTTAGGTGAATCAATGTATTCCACTGTAGACCAGACAAACAGACCGTCCGATGTGGCCGCCCGTCAACCAAAAGAGCAGTTATGTCGGGCGTCGTTCGACTACAAAGCCCAAGGGGATCAGGAGTTATCGTTTAAAGCGGGCGATGTGATCAAACTGCATTTCAAAGAAGACGCTACTTGGTGGTGTGGAGAAGTTCATGGGAAGAAAGGAATGTTCCCAAAAGATTTTGTAGAATTAATTCATTGACATGAAAGGTAAAACAACTGGAAAGCGTTTCCACGGGTATTCTGTGCGTATTCTGTGCGTTTGAATCGTTTTGTGGGAATCCTTTGGCAGCAATATTTGCAAGGTTCAAAGCTCAGTTCATTTTAGCTTGGACAACGAGCTCACGTTATCACGGACTACATTATAGAAAGATAATTTGTGTACACAATGCAATTTTCTTAAAATTCAGTACTAAATTTATACTTGACAGCAACCGAGAACTGGTGCACGTAATTATTCGATTGGCCACGCTATCCTGTTAACACTTTTACCTTGAGGCAATTACACAATGGTAGCTTTTGATTGCctggttttgttttaatatgtcatgtttttatttgtttcgttctttgttgttgttatatatTAACTGcacgagaagttgtattttttcCCTCTTAACCTTTGGTCCCACAACTTTAAGACCGAATTCCTGCCCTCTAGGAGGGTGCATTCAGAGTTTTCTTTACAGGGCCATTCCTGGCTTGTAAGGTCTGTTCTTCACGTATCATGACTGAATTCTCTGCGTCGATGTTGCGAGTCGTGGCTTCGCACCTCGCTGAGGATCTCATGAAACTGTTGTCGGTTGATCTTGAAATGATTACGCGCGAACAGACCCGCAACAGCAATTTGATTGGTTCAGGGGACAGACATAAACTCGTACTGATTTTGGTTGGTTCAGCGAATGACACGCATTTTATCTGGCTCATGTATTTCACTTGGACATCACTGTTTTAAGCAATACAGCTGGACAATCGAACAATCCGTGTTCAATATTACGGCATGACTTGTGTTTAATattacacggcattcatggaacaCAGGTTTATAAGTAGCATATTGCTGTAAGTTAAGGTACTGTAATATTAGGATTAGGATTTTAGGTATAaggatacctgatgaattttttaccgtgtataaataatgattaaagaAAGATTAAAGGGTGCTCTTGGTGGTAAGCTGTTTTGATCTTTTAAACCAATGGCGCAAATTGCGagcaccatttttttttttttttatcaaagtcaagaaaaagaaagttaGGCTTCATGTAATTGGCCAAACAATAGCGTGCCAAAGTTGGCAATTGAAGTTGATTTAATCTGATACCAGTACTAAAGATACACTGTACGGAATAATTTGCTGTGGTTAGAAATATAGATATTAATtttagaaatgcatgaaaccccaaatggaaacttgaaaaaaaaaatccgagttccggttcccatctggaactcggaatttttttttctgagtttccatttgggtttccatgcatttctatcatgttgtatttcttatttcactcactttggagatattaattttgaaaagaagaagaaaaagctaTATTTTCGTGTTCAAGTAAAGTCAAAAGGACATTAAGGAGTGGCATTCTCGGTTTCTTTTTGAGAAACCAGTAAAGGAAAATTAATTGTGGGGTAAAATAGTAGATGTTGAATAATTAGAAAAAACAAACTACTGGAATTTTAAATGCCAAGTGTTGGCCTTGAAGGTCTTGCGATTAGACCCTGCAACAAGTCGCTTACTAAACCCCCGTTGTGTGCCCACCTGGTATAATAAAGCAATGTATAGGTGACTTATCTAATGACTAGATAATTGAATTTTAAAGGTGTATAAATACCAATAAATGATATTTAATTTTCAGTTGTTGTTTCTGCTTGTGATAAACTCCACGCAAATAGTGTAC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P97814	Proline-serine-threonine phosphatase-interacting protein 1 OS=Mus musculus OX=10090 GN=Pstpip1 PE=1 SV=1
O43586	Proline-serine-threonine phosphatase-interacting protein 1 OS=Homo sapiens OX=9606 GN=PSTPIP1 PE=1 SV=1
Q99M15	Proline-serine-threonine phosphatase-interacting protein 2 OS=Mus musculus OX=10090 GN=Pstpip2 PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005990 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00611 all species →	FCH	Fes/CIP4, and EFC/F-BAR homology domain	Family	Interproscan
PF00018 all species →	SH3_1	SH3 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR027267 all species →	Homologous_superfamily	AH/BAR domain superfamily	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR001060 all species →	Domain	FCH domain	Interproscan
IPR031160 all species →	Domain	F-BAR domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23065 all species →	PROLINE-SERINE-THREONINE PHOSPHATASE INTERACTING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005884 all species →	Cellular Component	actin filament	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0030041 all species →	Biological Process	actin filament polymerization	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12804	PSTPIP1; proline-serine-threonine phosphatase interacting protein 1	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.