Gene detail

Detailed information of pspe_0.1.m1.37782.m1 in Pachyseris speciosa

Genomic Location: Sc0000349:524877...537987
NR annotation: XP_029214570.2, uncharacterized protein LOC114977866 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

pspe_0.1.m1.37782.m1

CAATATTCCTACACCGGAACTCAGAAGAAAACCCTTGAAAAATATTATATTGTGTCAAGTCAAGAtcgctttatttaaacacgatcgcTACTGAAGTACTACACGCTTGTGGAGTCGTGTACTATCTCTGACTaactaggatacttcacaaattaatgtgatcaagtaagctgaagccactcaaaaggcactaaggccaactAACATACAAATAAGGCTAACTAACATACAAATGTAATAAAACGAAGCTAAAGGTGGCACACTTAAAAACTATCTAAGATAATACATAAGATAAGTCGAAATAAGGGTTAATATAGGCTAAATTTTATATAAAATTCAGAATTTGAAATAGGACATCTTTTTTGGTACCAGCTGGACAGATAAGCTGTTAATATCGTCGAGTTCCATAACTGAGGGATCTACTGTGTTCACTTTGCTGTAAAATTGCTTAAAGTTAAAAGAGCCATTAAAAGCAACCGAGGCAAAATTCCACAACTGAGGACCTCTATATCGAATTGAATTCTTCATAAAATATGGAGAAAATCGTGGAACGACAACCTTGTTATGTCCTCTTAGGTTATACGGACTGTTTCGCCATACAGCCAGATCTGAGATCAACTGAATGAGGCCGTGTTATCGCTGGCTATGGTGTAAAATAATTTAACGAGACTTATTCATCCCTTATTTCTCTTTTATTCCTAAACCGCAGTACTGTAGTTATATCCAGGATAGTTAGGCTAAACTAAGCTCCCCGGCTTATGAGTTCTGAATACCAAACGTAGGCATGAAACGTGAGCAGGCCGATATCCCATTTGCATCCTGTTATTCAGTGCAAACATTGTTTTCACCTGCAGTTTCGAGTAAATAACAGGGTCATATCAATTTCAACAACCCGCACACTTATTAAAAAGTGTCCCATCATGATGTTAGTTAACAAAGCAGTCTGTCTTTAGATGAGATAGCGGTTCGGTCACAACTTCACCGGAAAGGTTCTCCTTTACTGACTAGAAGTATAAAATGGCGGTGTCTACACCGATTGTGACTGCAATCGTACTCTCTGCACTGGTTTACAACACTGCATTTGCTGCTGAGCAATGCAATGGACCCCGCCAGGCCTCTATATATGGCAAGATGTTACGAGGACACACTTATAACAAGCGATTTGCCCCGTCCGGTCATGCAGAATGTTTGTTTACATGCAGATTAGAAAACGTCTGCCAAAGTTTCAACTTCGCAATGTCAACGAGTGTGTGTGAGTACAACAACCGCACAAAGGAAGCAAGCCCTGAAAATTTTGTGAACGACTCAGACCGATACTATGTTAAACTGGACGTTCGTAGAGTACCTCTTGGCTCCATGCCTGAGCTGCCGGCCAAGTCTTGCCAAGAAATCAAGGACAATGAGGAGGGTCAGACTGTCAGTGGCAAATATTGGTTCTACTCTATCATACCAGGGACGAGTGTCTTCGCTTACTGCAACATGACGACAAACGACATTGATGAGTGCAGCGCTTCTCCTTCAGTCTGTGCCAATGCTGACTGTGAGAACAATAACGGCTCATATGTTTGTACGTGCCATCCTGGTTTTACCGGAAATGGAAAAAGCTGCAGTGACATTGATGAGTGCAGTGCTTCTGCATCCCCCTGTCATGTCAATGCCTCCTGTGAGAACAATGACGGCTCATATGTTTGCACGTGCCATCCTGGTTTTACCGGAAATGGAAAAAGCTGCAGTGACATTGATGAGTGCAGCGCTTCTCCTTTCGCCTGTCATGTCAATGCCTCCTGTGAGAACAATGACGGCTCATATGTTTGCACGTGCCATCCTGGTTTTACCGGAAATGGAAAAAACTGCAGCGATATTGATGAGTGTGCAAGTGACTCGCATGGTTGTCACGCCAATGCCTCCTGCACGAACACCGTGGGATCTTACAGTTGCGCTTGCAATTCACCCTTTTACGGAGACGGAAATACTACATGCAAAAACGCCAGTGGCCTCCTTACATCCAGTATTCTTGACGGCTCACTTATGAATCTGTACCACTTGGCTACGTTTTTAGAACCAGTTCTGCAGAACTCAACACGCAGTAGATTTGTGAGGTGTTGGCGCGCTGCTTCAGACGGTTGGGCGGCCTCTACATTCCACAGCAGGTGTGATGGAAAGGGACCTACTGTTACCATCATCAAAGTCGGTGGTTACTTATTTGGTGGATACACCAGCCTTTCTTGGTATCAGTACACCCCGCATTGCAGTTATGCCACCGACAATAATGCATTCATCTACTCACTGTACAATATATATAGTAATAATCCTGTGAAGCTGAAGGTGAAATTAGGGTACTACGCTATTTACAGCTGTTCTTCTTACGGACCAACGTTTGGTGGCGGACACGACATCCACATAAGCGACAATGCTGGAAGCAACAGTCGGTCATACACTAATTGTGGCCACTCCTACCCACTCCCAGCAGGCTATTCTCCTCCTGCTTACTGTTTATTTTACGCTGGAAGCTACCACTTTACTCCCGCTGATATTGAAGTATTTTACGAAACAAGTTAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07534	TLD	TLD	Domain	Interproscan
PF12947	EGF_3	EGF domain	Domain	Interproscan
PF12662	cEGF	Complement Clr-like EGF-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006571	Domain	TLDc domain	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan
IPR018097	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR000152	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR024731	Domain	EGF domain	Interproscan
IPR026823	Domain	Complement Clr-like EGF domain	Interproscan
IPR009030	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24039	FIBRILLIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K18274	UMOD; uromodulin	-	Glycosylphosphatidylinositol (GPI)-anchored proteins	ko00537	deepkoala