Gene detail

Detailed information of pspe_0.1.m1.37801.m1 in Pachyseris speciosa

Genomic Location: Sc0000349:719358...737384
NR annotation: XP_029206792.1, cyclin-Y-like protein 1 [Acropora millepora]
Species Pachyseris speciosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

pspe_0.1.m1.37801.m1

CTGACCACAGAAAATGTCTTGGGTCAATCGAGAATTTTCGCCATTTATGCTCAATCCATGACGTAACTTCGCTACCAGACCAATAAAAATACAGAACCGCACGGTCGAGTGTGTTTGTTGTTCTCTTGTATTTCTTCCAGGTTTTAGATTGTCCACAAAGCACTGTTATCTGGAAATACGCCCTTCAAACCAGCTTTGCTTGACAATGTTGACATCCCGAAGCTGCCTTGGAGAATCTCTTGAAGCGAGGGATTGGCAAGCTTCCGTAATGTAGCTACTTGTTTCGTGGTGTGAAGGGATCGTGGAAAGAAGACTGTTCGAACTGGGCACGGACTTACGATGGGTAACATTCAGTGTTGTGTTCTTCCTTCGCCTCATGGCGGGCATATGGCTAAACATGAGCCGTATGATAGGGCAGGCGTTGCGAACGACTCCTTCGAGCTACCGCATATTAGCGACAGAGAAGATCTTTCAAATCACAAGGGAACACTATTTTTACACAGATCAATGTCTAATCCAGgTAACAATGGAACTTTTCCAGGAAGGCGCACAATGTCAACAGGAAGTGAAAGAAGAGATGGGGTTGGGgGAACCCTAACAAGAAAGTTTAGTTCCTGCTCAACAATCTTCATTGATGACAGCACTGTTAGTCAGCCAAACCTAAAATCCACCATTAAATGTGTGGCCTTGGCGATATATTACCATATAAAAAACAGGGACAAAGATGTAAGATCTCTTGATATATTTGACGAGAAGGTTCATCCTCTTACGCATGACCTTGTTCCAGATTATTATGACAGAGTTGATCCAGAACACAGACACATCTACAAGTTCATCAAGACTCTGTTTCACGCAGCACAACTCACTGCAGAGTGTGCAATAATAACACTAGTTTATCTGGAGAGGCTTTTGACGTATGCAGAGATTGATGCACATCCAGGAAACTGGAAACGGATTTTGTTGGGTGCCATATTATTGTCCTCCAAAGTCTGGGATGATCAAGCAGTATGGAATGTAGACTATTGCcaaattttaaaagacattACAGTGGAAGACATGAATGAATTGGAAAGAGCATTTTTGGAGTTATTACAGTTTAATATTAATGTGCCATCAAGTGTCTATGCTAAATACTATTTTGACTTGAGATCACTTGCTGATGCCAATGATTTAGTTTTCCCTCTTGAACCTCTCAGCAAGGAACGAGCAAGAAAACTAGAGGCTCTGTCAAGCGTGTGTGATGACCGTTTTCGAGATTTAAATACAACGAACTTGTACCGATCAAAAAGCGCTGATGCACTGACGCCTCGCCGTAGGAGTATGGCTATTCTGTCATGACGAATCTTGCAAACCTGTACAGCTGTTGCACCTAGAGAATGGCCAAGGGAATTAGTGGGACAGAAGGCACGCAGATTGTAGTTTGTATGAAAGGGAAGTGTTGTTCAAATCGTTGGCCTCAACTGGGGTCCCTTTGGGTGCGTAGAGAAATACGGTACAGGTATGGTAACGTCACAAGCAAATTGCTTGCGTGACAGTCCGCCAGCTAGCGTGGCGCACCTCTAGTTTTGTCACGCAATCCTGAAGCACTTTCAAGGGGAAAGCACTCAAACGCCGGTAGAGTGACATGCCAGATGTATGTTTTGACGAGCCACCTAACGACATGGACTATGCTGATGTAGGACTAGCATAGCTAATGCCAAGCAGTAACCAGGAAACTCCAAGGCATTGGAAAGTGACAAGAGTGACGTGGCACACGCACATAATCCGATGACATACTAATGTGTAAAGGAGATTTTGTCACGCAACACCTCGGGGGATTTGCAACACGCGGAAATCTTCTTACGAGCATCGCAGCTCTGTCAAAGTAACGATCACTAtatgtcacgctatttggctaGAAGAGGAAGTCGCAAACCATGTTATTGATACTGAAGCATAACTGCCATGATGAGACATGCGTATAGCGTGACTAAACATGTACATATATTTTGTCACGCATTCGTTCACCAGATGTTATTCACTGCAGCGGAAAACTGAATTTCCTTTTCATGCGATAATCAAATGACAAGTCTACGTTGTGTAGAGACAGAATTTCTTTAGTTATAGTTTTAAATCCAACCAACATTTGCCTTTTTAAAAAAGCGACTTGAGTTAAAAAGTctacttgggaaaacgaacaaTTTGcttaagaattttttttaagtaaCTAATGATGTGATACTAAAAGTAGACATCTCTTATTCGACCATCTCCTCTTGCTTTTACCATAGAATGATAATATATGTTCTGTTCAGCGTCcacttttcattttgttttcgtaTTCTTTACAAAATTATGAGGATTTTTTTGATAGGTCTGCGCTATTTTGTTAATTTTCGCTGATGTATTTAAGTTATTTTTTGTTCCGACAAAGTTATAGATGCGTCGCCGTGGTGATTTTTACGGTTTGAGGTTCAAAATAAACCTAAGTACCCTCAAACACCTTTCTTATAACCAAAATTCTCCTTTTAAACCAAGAGaaagatttttatatattttcttAAAAGGAGATCAAAGacaagaacttgaaaaagttggcccagtttttgtgtgggataccggGAGTttcaatgcattgtggacaatGTATCTCACACATGTATCCTTTGGGCACCAATTTTTCCAAGTTGCAAGCCGTAGTCGAAGAGGTTTATTTGTAGTTTTGGTACATttgaaacaaaactgaaccatcATTTTTGGCCTAACTTTGCATCCAATGTGTCCAGCTCTTGAAAGAAAATTACAGTGTTGAGTGACCtgacttaagcctggtttcgctagcgacgcaagcacaagcgaaagcaaagtagcttatgccaagtgaaaacgaacgtcgttttcacacaacgcaagcgaacgcaagcataagcgcaagcacaagcaaacggaaaaattttgatccttgcgcctGTGCTTgctcttatgcttatgcttgcgttaaggcCGTTTTCaaggtgaaataagcgctcctgtgcttgcgcttgtgcttgcttcgctagtgaaaaccaggctttagctaCTCTAAGTCATTTCCCAGATAAGAGTCATTGAAGCCATTCCACAACCTGTTTTTCTTGGACAGCACTGCGATTGGTGAATAAAActagcgccactttctcaaccaatcgGAAATCAAGCCATAGTCAATCGTGGCTAAACTCGTGACATGCCTGCgcgcgttttcccgcgcttaacaTAAACACTGCCTTTGATTcgatttctgattggttcattgcgttgTTTACGGTTTTGTCATTGGTTAGAGTGCAAAGCTTTGTATATTGACGCACGCGCAAAGGGCACCATTAGTAGGCTCCTTGCGAGAGTGAAAACTAAACTTTATTTCCCTCTGCTTCGAGTCTATTTACCCTGGCGGCTGTTATTGTGTCTTAATGGTGCACCTTCAACTCCCCTTCACTAGTTTCCAGGCCTTGTCATTTCTCCGCGGGAAAGCGAAGAAAGAAGCCGGAAAGTCCGAC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q08CI4	Cyclin-Y-like protein 1 OS=Danio rerio OX=7955 GN=ccnyl1 PE=2 SV=1
Q6NRF4	Cyclin-Y-like protein 1-B OS=Xenopus laevis OX=8355 GN=ccnyl1-b PE=2 SV=1
Q28EL0	Cyclin-Y-like protein 1 OS=Xenopus tropicalis OX=8364 GN=ccnyl1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006987 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00134 all species →	Cyclin_N	Cyclin, N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006671 all species →	Domain	Cyclin, N-terminal	Interproscan
IPR013763 all species →	Domain	Cyclin-like domain	Interproscan
IPR036915 all species →	Homologous_superfamily	Cyclin-like superfamily	Interproscan
IPR012399 all species →	Family	Cyclin Y	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14248 all species →	CYCLIN Y, ISOFORM A	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0045859 all species →	Biological Process	regulation of protein kinase activity	Interproscan
GO:0060828 all species →	Biological Process	regulation of canonical Wnt signaling pathway	Interproscan
GO:0061575 all species →	Molecular Function	cyclin-dependent protein serine/threonine kinase activator activity	Interproscan
GO:0000079 all species →	Biological Process	regulation of cyclin-dependent protein serine/threonine kinase activity	Interproscan
GO:0019901 all species →	Molecular Function	protein kinase binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for pspe_0.1.m1.37801.m1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.