Gene detail

Detailed information of pspe_0.1.m1.37844.m1 in Pachyseris speciosa

Genomic Location: Sc0000350:544372...557001
NR annotation: XP_029188475.2, succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

pspe_0.1.m1.37844.m1

GTCAGCATAGAGCAAATTGGAGTCCGCCACATCTACAATAATACAAGGGCTAACCTTTTGATTGGTAAACACACAAAACTCATTTGTCAAGGTTTCACTGGGAAACAGGGTACTTTTCACAGCGAACAGTCCATTGCTTATGGAACACAGATGGTTGGAGGTGTGTCACCAGGCAAGGGTGGACAAACTCACCTAGGGCTTCCTGtatttgatagtgtgaaagaGGCTAAGGCTGCCACAGGTGCCAATGCAACTGTAGTTTATGTTCCACCAACATTTGCTGCTGCAGCAATTTTAGAAGCCATTGACGCAGAAATTGGTTTAATTGTTTGTATTACTGAGGGAATCCCACAGCAAGATATGGTGAAAATCAAACACACTCTAGAACGACAAGATAAAAGTAGAATGATTGGTCCTAACTGTCCTGGAATAATCAAGCCAGGGCAGTGTAAAATTGGTATCATGCCTGGCCACATACACAAACCAGGAAAGATAGGTATCGTTTCAAGGTCAGGAACTCTAACTTATGAAGCTGTCCATCAGACAACAGAGGCAGGCCTTGGCCAGTCTCTTTGTATAGGTTTCCTCGGCCGAATGATTCCGCCTTTCGACCAATCAGCGATCTATTTACAGATACGATATCAACCACAGACGGAACAGTCCCTTACATTCTCAGACGATCAAGTGGCTTCCTTCTTGGAAGAAATGGGAGCCTATCTGGAAGGGCAATTGGCCCAAGTAAATGCTGCCAGCCCACAGATGGATTACCTTACCAGATGGGACTACATGGTGTTCACGGCAGTGAAGTTCCTAAAAGAACAGCCCGCCGTACAGAACATTTTGAATGCCAACCAGGCATCCACTACAAACAACTCTGAAACCTCTGAGCTGTTTGTAACTAGTACCACAGATGCAGATTAAGTATAAAGAGAGGAAGTGAAGAGCGGGCTTAGAAACATACGTctaaaattaataaagttgtcACCTTACTACTCTCCAGGCTCATCATTGCTATCAATTTTATCCGACACATATAAGTTTTTTAGTGTCGCTTCAAGTTTAACATGTTTGTTGTCTTTCCTACATAATGTCTATGTACACAGTTAGTATAACCAGCCCCACCCCAAATGATGAAGCATTATGTGAAATATCAGAGTTAATTAGCTTCTATCTATCttcaattgttttttttctCTGGCCAAGACGTCACAAGCCGCTTTCAATTAATTAAACCGAAATGTATTTTCGTGACGCATTACTTCAAGAATCACCTCGTTAAAATATTTCACTATCACGACAAACAGCGGCACCAAAGTAACGATATTTCCGAATGTCAAACTGCTGATTATATTACGCAGGGGGGCAAGTCCTTGCCTAAAGAAGACTGGTCGAAGTGTTTTTAAAATTGTTAGTCTTGCTATCAACAAGTTTGAGAGTTATAGAGTTTGAGAGATAAGAATATGTGTTCCTGAACCTATATCATCTAGAAATCAGGTGTATTGTTGAAACCTACGCTTGTTACAATTTTGAAATTACTGGCATTATTTCCATGGAATGAAACTTATTAGCACCGCTTCCGAAACACGCGCGCCGTAAAATCATGCAACTCCTCACCTCTCCcctccaaagaaaacaaagtttaGTCTTACCTTAACAATGATTAATAATATTACATATTCAGActttgccattttttttcttaaaccaGAAAGAAATTTAATTCGGATAACGTTATTTTATAAAATCCCTTAGCTATGTCCAAACTGGGGCTGTCGTAAAGACCGGTTGTGAATAAAATGTCATGCATGTTACATGACTATGCATTTGTTGTCATACATGTCGCGGCAGCGTGCCGTGTAGCCCTGTGAGCGTTGAAGATGAACGTCTCCATCGAAACTGCACTGTGAAAGTTAATCATATTGCACTAAAAGGTTAATGACAGTTTGCGACTATCAATAAGTGCAGTTCAAGCAGAAAATGAACTCGAAGGGCGGAAAATTCACAGCAACCTGCTGGACGTGCAAACCGAAGC

Protein

Uniprot

Uniprot term	Description
Q9YGD2	Succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial (Fragment) OS=Columba livia OX=8932 GN=SUCLG1 PE=1 SV=1
P53597	Succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial OS=Homo sapiens OX=9606 GN=SUCLG1 PE=1 SV=4
P13086	Succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial OS=Rattus norvegicus OX=10116 GN=Suclg1 PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02629	CoA_binding	CoA binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016102	Homologous_superfamily	Succinyl-CoA synthetase-like	Interproscan
IPR036291	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR003781	Domain	CoA-binding	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11117	SUCCINYL-COA LIGASE SUBUNIT ALPHA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004775	Molecular Function	succinate-CoA ligase (ADP-forming) activity	Interproscan
GO:0004776	Molecular Function	succinate-CoA ligase (GDP-forming) activity	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0006099	Biological Process	tricarboxylic acid cycle	Interproscan
GO:0009361	Cellular Component	succinate-CoA ligase complex (ADP-forming)	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K01899	LSC1; succinyl-CoA synthetase alpha subunit	EC:6.2.1.4 EC:6.2.1.5	Propanoate metabolism	ko00640	deepkoala