Gene detail

Detailed information of pspe_0.1.m1.38151.m1 in Pachyseris speciosa

Genomic Location: Sc0000355:794962...802653
NR annotation: CAH3196991.1, unnamed protein product [Porites evermanni]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

pspe_0.1.m1.38151.m1

CGCGAGAAGAAAAGCAACCcaggttgaaaaacaaaattaatacaagTCGTGTTTCAATGTTAATAATTCGGCCTGCTAATCAATCATAGATCACAACCGTTTTCTTAATTGTGACATATGCCACTGCCTCAGCTAAGATGGTCACAACAAATAATTCACTGTGCGTAATATAAATTCTAAAGGGGCGTCAGTTATAGAATCGCTAGGTCATTTGCCCAAGCGTGCAAGATCTGCTATTGACTCCGAAGCGCGGCTCGATCAGTGGAAAAACTTAACATTACCGCACGTGATAAAGGTAATCCCCTACAGTCGAGGTTCCACAGTCAAAATGGAGATTTGTTCAGTGTGCGGCGACCACTCAACAGGACGGCATTACGGCGCGAATACTTGCGAGggctgcaagttgttttttaaacGGAGCATCAAGAAGCGGCTGTATTACTCTTGCCGAGTGGCTGGCTGTTGTCCAGTCAATAAACGCTACCGAAATAGCTGTCAGTATTGCAGGATGAAGAAATGTCTCAGGGTGGGAATGAAAAGAGAAGCTGTACAACAAACAAGGGCGCAAGATTTCGAAAAGGGAAGAAGACGAAATCGTCGACAACAAATGAAGGGGGACACTCGACGAGAGACAGATTTTGTGTCCTTGTCGGACTTTGTTTGCCATCTTCAGTCTGTGGAGCCTTATCAAACACCGCAAACGAAAAGCGATTCAAGGTTGGCTAAAGACGAAAACAACGCCTATGACCGCGACAGCAACAGCGCTGCTCCAAAACTACCGGTACAGCGAGAAAACACGTCCGAAATTGCCGCGCGTTTGCTGTTCATGTCCATTCACTGGGCTAAGAACTATCTCTCCTGCAGGAAAACTGGTGCAAAATATTTTGTCATTAATCTCGTGCAGTGGGCCATGCCGTTCGAGATAGCGCCTTTGGTCGCTGAAGTCGTGGAAAAAACATCCCCGGAACACCTGGATCGAGTTCTCCACGACATCGGGAAGTTGAATGAGCTTGTCCAGCTGGATCTGACCAGGGCCGAGAGCCTTTTGAGTCTTAGCCATTTGATCGGCGCTTTTCAACCCCGttTCAAGCTGATTTCGCTCAAGGTGTGCTACTCCGATATCGACCAACTTTCTGACGCAGTTCAAGTGCAAGCTGTACAGAACAAGACACGTAATGCCTTAGAGGAGTATACACGCGTTCACAGACCGCAGGCAACTAGTCGCTTCGGCCAGCTGTTGATTAAACTAACGTCCCTAGGCGCCGTGGATCCTACAATTCTAGAACATGTGTTCTTCAACAAGCTTATTGGCGGAGCGTCCATTAATGGTCTTGTGGATGACATATTGAGAGCTAACTCTTTCGGCTCGCATATAAATGTTAAAAGCGCGAATATTGCATAGCTCGAACGTAAAAACGTTCAAGAGTTACTTGAGCTTGTAGCGTTGTCTACTTTATAGCGCAAATGCAGAGGCGTAGTTTAATCGAGCGGGCAATGTAGTGCAAGAATGGCTAAAATTTTGTCGCGACGTTTTTAGTCGGAGGGTGTAAGGGGATTGAAGTTAAAAGGAGTTTGAAAAGTAATATAAAAAAAGCTAAATTAGAAAGTTAAAGAAAACTAGGAGCACGAATagacaaaaatggcaaaaaatttTAATAGGTCAATGATTTTCGCAAAACCAAGGATGTATATAATGTTTTCAAAGTCGCCTTGTTTCTGCGGCGAACAGTAAGGTTCACAAACGAACCGTCTCCAGTTTTACTCATTTTATCCTGTGGATAGAGAATAAATCAGTTATCCACTGTATGAAGTTATTCACTGTTTTTATAATAATCCTTTTGCTTAACGATGTATATTTACACTCACGTCGACCACGTACCCTTATTGAAATGACTGAAAAAAATCGAAAGGTTAACAAATTGTACACTTTAGGGCATTTATATAACTTGTAGATACATTTATCCAAGGTGCGTTTTCAGTAATTTAATATTCTCCGTAACTGTGTGAATACAGAATAAAAGTTTTCATTAATTACTGTTTTTAATACATTTATGGCTCTTCACGCAACATTTTAAAGAAGGAATCATTAAGCGCAACGTTTAATTAAATTGCTGTGTTTTTCCGTACGAGGACGGACACAATCGATG

Protein

Uniprot

Gene family

Uniprot term	Description
Q06725	Nuclear receptor subfamily 2 group F member 1-A OS=Danio rerio OX=7955 GN=nr2f1a PE=2 SV=1
Q60632	COUP transcription factor 1 OS=Mus musculus OX=10090 GN=Nr2f1 PE=2 SV=2
P10589	COUP transcription factor 1 OS=Homo sapiens OX=9606 GN=NR2F1 PE=1 SV=1

Gene family	Subfamily
Transcription Factors Family	Miscellaneous
Transcription Factors Family	RXR-like
Transcription Factors Family	SF-like
Transcription Factors Family	GCNF-like

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00105	zf-C4	Zinc finger, C4 type (two domains)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001628	Domain	Zinc finger, nuclear hormone receptor-type	Interproscan
IPR000536	Domain	Nuclear hormone receptor, ligand-binding domain	Interproscan
IPR001723	Family	Nuclear hormone receptor	Interproscan
IPR013088	Homologous_superfamily	Zinc finger, NHR/GATA-type	Interproscan
IPR050274	Family	Nuclear hormone receptor family NR2 subfamily	Interproscan
IPR035500	Homologous_superfamily	Nuclear hormone receptor-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24083	NUCLEAR HORMONE RECEPTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0043565	Molecular Function	sequence-specific DNA binding	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0004879	Molecular Function	nuclear receptor activity	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0030154	Biological Process	cell differentiation	Interproscan
GO:0048856	Biological Process	anatomical structure development	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K08547	NR2F1, TFCOUP1; COUP transcription factor 1	-	Nuclear receptors	ko03310	deepkoala