Detailed information of pspe_0.1.m1.38581.m1 in Pachyseris speciosa

Genomic Location: Sc0000364:281308...291088
NR annotation: XP_015751621.1, PREDICTED: AT-rich interactive domain-containing protein 4A-like isoform X2 [Acropora digitifera]
Species Pachyseris speciosa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P29374AT-rich interactive domain-containing protein 4A OS=Homo sapiens OX=9606 GN=ARID4A PE=1 SV=3
F8VPQ2AT-rich interactive domain-containing protein 4A OS=Mus musculus OX=10090 GN=Arid4a PE=1 SV=1
Q9JKB5AT-rich interactive domain-containing protein 4B OS=Rattus norvegicus OX=10116 GN=Arid4b PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0006047 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01388
all species →		ARIDARID/BRIGHT DNA binding domainDomainInterproscan
PF08169
all species →		RBB1NTRBB1NT (NUC162) domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR051232
all species →		FamilyAT-rich Interactive Domain/SWI1 Chromatin RemodelingInterproscan
IPR002999
all species →		DomainTudor domainInterproscan
IPR036431
all species →		Homologous_superfamilyARID DNA-binding domain superfamilyInterproscan
IPR001606
all species →		DomainARID DNA-binding domainInterproscan
IPR012603
all species →		DomainARID4A/B, PWWP domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13964
all species →		RBP-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000976
all species →		Molecular Functiontranscription cis-regulatory region bindingInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0006357
all species →		Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for pspe_0.1.m1.38581.m1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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