Gene detail

Detailed information of pspe_0.1.m1.39090.m1 in Pachyseris speciosa

Genomic Location: Sc0000373:22064...29547
NR annotation: XP_020632602.1, uncharacterized protein LOC110069416 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

pspe_0.1.m1.39090.m1

ATGGTGCTTCTTCTTTCAGTGGAAAACCGGTGTCCTGCGAAGAAGGTCTGTGGTAAGACCCCATCAGATAAGAGCAGGCAAGACAAAATGGTCTCATACCTTGCAATACAGCATCTTACATACCTGCTGTTCACTCTTCCCTTGACTTGGGCTCAAGTCCCAACTCAGTCTGTTTGTACAAGTGGTCATCTGTTTGACTTCGAAGACGTGAATGAAGCAAATTGCTTTCAGTCTAATCCACGTGGATCGGAATACCATCTTAGATCCCGTAGTGTCGAAATAGACAATACTGTTACCGCCCAGCTATCTAGCCTTAACTCTGCTGACCAATCCATGAAGAATAATGCATACAAAACTATTGCCGGTGACTACAGCGGAATGcaaaatacatttaaaagctACCTACCCTCAACACCATCCCTACACAGTGATCAAGTCAAAACTGCAATAAACTCTCTTAATCTTCATCGactaaaaaaaatcaacaaccTTCTCGATTACGTCAAACAACAGGGATTCGCCGACGGAAGTGGCCTTGGATCTTTGGACCACGAAATGAACAAGGATGGCGCTGGATTCATGCATACTTTGTTTCTTGTCAGCGACTCTCCAGGCCAACCTTCAAACGGCAGATTGTTGGACCTTATAAGTACAGCCAAATGGTACAATGACTTCGGAGAAGTTTATCAATCACCAACATTTGAAATCAAAGGAACCACTGCTGACCGTATGATCACGCTACTACTGTTTAGACTCATTATAGTGTTGGCCAAGATTCGGGACATGGACGCTGTGCTTCGATGGATGAATAACGCCTTGGCAGTGAATGAAGGTCTTGGGGGAGTGATCAAGCCTGACTTCACAGGACATCACCACAAAGCGTTTTATGGATCAGCGTATGTGCCACAAGCCTTGCACAATGCGGCTTTGGTTCATTACCTTCTTGGAGGAATGGAATTCGCTCTATCGACAACATCGGTAAACAACATCAGACGAGGACTTGAAACGCTGCGTCTTATAGCGGTCAAGTATTCCACTCCAAACAGTGTTAACGGACGGTTCCCAAATTACGTTAAGAAGGTACTCATCAAAGCTGCATTACCAGGTCACTGGTCAAAGAACTTCGCCGTTCTATCTGTACACCGGCGCAAGCAATGGGCTGCTTCTTGCAAAGGCTTCAACCGCTTCATCTGGGACTACGAAAATAAGCCGCGTAAAGAGAACATTTACGGAATGTTTGCTAGTCATGGCGCACTCCTGATTGCCAACAGTGAATCACAACTTAGCGTCCATGATGTCACACACGGCTGGGACTGGGCTAAAGTTCCAGGAGCAACAACGATGGCGCTTGGAGATCCAAATCTGGATGATTTAAACATAGGTAACGCGAGGTTCTACAATCAAAAGGATCTTGCCGGTGGTCTTACATTTTTAGGTACAGGATCCTTAGGAAACGGAATTTTTGGTATGGACTTTAAACAACCAGATTACCAATTGACTGGAAGTCACATCAAGGCACAAGACACTAACAGCAAAGTCATTCAAACAACTCTTTTTCAAGACAAGCTAGTAAGTGGAGTGAGTTCGTCCCTCATAAAAGTCAACAACGTCGCAAAAAACTATGCAGCTACCTTCCCTGTCGAAACACCTACGTCTGCAGGCAGAAGCTATACGTCCCTCACTGATGCAAAAGGAAACTTCTACTACATACCAAGTGCAAGCAAATCAATCTTGAAAGTTCAAGTGCAAGATCAGACCTCTAAGACCGATGATGGCAAAACATCAACAACAGGCCGTTGCGGTACTGCATGGCTCAACCATGGTGCAACTCCGTCCAATAGCCAATATGAGTACGCAGTTTTGATCCCAACCCAAAGTTACTATGCAATATTAGCTGACTTGGCAACGGCCCAGGAAACACAAGGAAACGAAGTGTACAAAGTTCTGCAGAAAGATGAGACTGCCCATGTCGTCCAGTTTCTCAAGACACCAAAGTCATGGACCACACTCAACCATCCCATTACTGGTTATGTCATGTTTGCAAGCGCCACAAGGCTTCCACGTGATGGTCCAATAAATAAAGTAGGAAGGGGAAACTGTCTTATCATGGCCGAGGAAACTTCCCAGTATATTTTTCTCAGCATAAGCATTCCAAGCTTGAATCTTCGTACCGCAACGGATCCTCTCACTAATTCAGGTGATGTGGAGCAAGAAGAACTGTATCATTCATCAAGTGAGGAAAGAAAAGTAGATGTCACGTTAAAAAAAGGAAGTGCAGAAGAGCATCGTGTCGGTCCAAACTCATGGTGA

Transcript

pspe_0.1.m1.39090.m1

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02278	Lyase_8	Polysaccharide lyase family 8, super-sandwich domain	Family	Interproscan
PF09093	Lyase_catalyt	Lyase, catalytic	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014718	Homologous_superfamily	Glycoside hydrolase-type carbohydrate-binding	Interproscan
IPR039174	Family	Chondroitin sulfate ABC lyase	Interproscan
IPR008929	Homologous_superfamily	Chondroitin AC/alginate lyase	Interproscan
IPR011071	Homologous_superfamily	Polysaccharide lyase family 8-like, C-terminal	Interproscan
IPR003159	Domain	Polysaccharide lyase family 8, central domain	Interproscan
IPR011013	Homologous_superfamily	Galactose mutarotase-like domain superfamily	Interproscan
IPR015177	Domain	Lyase, catalytic	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37322	-	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0030246	Molecular Function	carbohydrate binding	Interproscan
GO:0006027	Biological Process	glycosaminoglycan catabolic process	Interproscan
GO:0005975	Biological Process	carbohydrate metabolic process	Interproscan
GO:0005576	Cellular Component	extracellular region	Interproscan
GO:0016829	Molecular Function	lyase activity	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan