Detailed information of pspe_0.1.m1.39209.m1 in Pachyseris speciosa

Genomic Location: Sc0000375:44401...50377
NR annotation: KAJ7392667.1, Transcription initiation factor TFIID subunit 9B [Desmophyllum pertusum]
Species Pachyseris speciosa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9HBM6Transcription initiation factor TFIID subunit 9B OS=Homo sapiens OX=9606 GN=TAF9B PE=1 SV=1
Q5R7P7Transcription initiation factor TFIID subunit 9B OS=Pongo abelii OX=9601 GN=TAF9B PE=2 SV=1
Q17QQ4Transcription initiation factor TFIID subunit 9 OS=Bos taurus OX=9913 GN=TAF9 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0007262 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02291
all species →		TFIID-31kDaTranscription initiation factor IID, 31kD subunitDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR051431
all species →		FamilyTranscription initiation factor TFIID subunit 9Interproscan
IPR003162
all species →		FamilyTranscription initiation factor TAFII31Interproscan
IPR009072
all species →		Homologous_superfamilyHistone-foldInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR48068
all species →		TAF9 RNA POLYMERASE II, TATA BOX-BINDING PROTEIN (TBP)-ASSOCIATED FACTORInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000124
all species →		Cellular ComponentSAGA complexInterproscan
GO:0003713
all species →		Molecular Functiontranscription coactivator activityInterproscan
GO:0005669
all species →		Cellular Componenttranscription factor TFIID complexInterproscan
GO:0016251
all species →		Molecular FunctionRNA polymerase II general transcription initiation factor activityInterproscan
GO:0043966
all species →		Biological Processobsolete histone H3 acetylationInterproscan
GO:0051123
all species →		Biological ProcessRNA polymerase II preinitiation complex assemblyInterproscan
GO:0006352
all species →		Biological ProcessDNA-templated transcription initiationInterproscan
GO:0046982
all species →		Molecular Functionprotein heterodimerization activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for pspe_0.1.m1.39209.m1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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