Detailed information of pspe_0.1.m1.40313.m1 in Pachyseris speciosa

Genomic Location: Sc0000396:623325...631516
NR annotation: XP_015759298.1, PREDICTED: E3 ubiquitin-protein ligase TRIM71-like [Acropora digitifera]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
E7FAM5E3 ubiquitin-protein ligase TRIM71 OS=Danio rerio OX=7955 GN=trim71 PE=1 SV=1
D3ZVM4E3 ubiquitin-protein ligase TRIM71 OS=Rattus norvegicus OX=10116 GN=Trim71 PE=3 SV=1
Q2Q1W2E3 ubiquitin-protein ligase TRIM71 OS=Homo sapiens OX=9606 GN=TRIM71 PE=1 SV=1
Gene familySubfamily
Ubiquitin FamilyE3|E3 activity RING|RING

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00097zf-C3HC4Zinc finger, C3HC4 type (RING finger)DomainInterproscan
PF01436NHLNHL repeatRepeatInterproscan
PF00643zf-B_boxB-box zinc fingerDomainInterproscan
PF00630FilaminFilamin/ABP280 repeatDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001258RepeatNHL repeatInterproscan
IPR018957DomainZinc finger, C3HC4 RING-typeInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR000315DomainB-box-type zinc fingerInterproscan
IPR017868RepeatFilamin/ABP280 repeat-likeInterproscan
IPR011042Homologous_superfamilySix-bladed beta-propeller, TolB-likeInterproscan
IPR047153FamilyTRIM45/56/19Interproscan
IPR013783Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR001841DomainZinc finger, RING-typeInterproscan
IPR001298RepeatFilamin/ABP280 repeatInterproscan
IPR003649DomainB-box, C-terminalInterproscan
IPR014756Homologous_superfamilyImmunoglobulin E-setInterproscan
IPR017907Conserved_siteZinc finger, RING-type, conserved siteInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR25462BONUS, ISOFORM C-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0046872Molecular Functionmetal ion bindingInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan

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