Gene detail

Detailed information of pspe_0.1.m1.41023.m1 in Pachyseris speciosa

Genomic Location: Sc0000410:278060...282039
NR annotation: CAH3029714.1, unnamed protein product [Porites evermanni]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

pspe_0.1.m1.41023.m1

GGAGCGTGGGACAACAATACGGCTTTACCTATCGACTCTTGTCAACAACGGGGCTTGATTTCCATACAGAGGTCAAAAAACTGGTCAACTTTGTATTGTCTACTATCAAAAACAAATTCATCTTGTTCAAATTCCCCATTTAAGAAGCTCAGTGTGTGGACAAATGGAACAAGAGTTAAACACACACGGTtgccaagcaaaatcgaaaagtGATAGAGGCACAGAGTTCAATGTGACGTCGGCAGAGTCGGACTCGATCGGTAACGAAAATTCATGCGAAGGCTTGGAGACCGCTAGTTCACCAACAGATCGTACTTCTCCAGAAGAGAAAGCTCAGGAAATCTACCCTTGGATGAAAGAATTTCGTTCAAAAGgGGCACCGCAGGAAAAGGATGACAAAAACCGAACTATCTACAGCACAAGACAACTGGTCGAGTTGGAGAAAGAATTCCATTACAACAGATATCTGTGTCGACCCAGAAGAATCGAAATCGCGCAATCGCTTGGGCTTACGGAGAAACAAGTGAAAATTTGGTTTCAGAACCGAAGAATGAAatggaaaaaggaaaataaagtgGTGGAGAAAGCTTTGGTGAACGAAATTCAAGAGCGAGTTCGACAGCTAAGCGCTCAAAACCCGAACGGGTTCGGAAGTTTGACAACGATGAACAACATAAACATACAGTATCCGAATTCATTCACTGAAGTAAACTCCATTCAACAAGTCAGAGGAAGTTACGGGTTTTCCTCTCCGATGCAAAGCTATAACAGTGGATTTGTTGATCGGCAAAGACTGTGGAGCCAGGGACCTCTTGAACATTTTAACTCTTACTGACTTCCTTGAAGATTTTATGAAAACTAAAATTATGAAATTTCAcaccaaaaaaattgaaaatatcaccGGCGTTGTACGGGAAACCACTGGTGAATAGCTTTCGTTTGAATACACACACTTCAGAATTTCATCCACGgattcaaaagttagaacaAGCTTGTGCACCACAGGATAGCACTGCACTGATGTGAATgttcacactttaggatttcctCCATGCATTCAAACAATGGAAACACCTTGTACATTATAATAAACAAAACCACAGACAAATTCTGCACCTTTCTTCGTACAGtcgcaatttttaattttatccaAATCTTCTGAATTTACAAACACATTTGCGGTTGCAGTTAGATTCAAGGAAGTGAAGAGTTAATCTCAAATAATCCTCAGAGTTAGCAGTACATATTGTTGTTCATATGTTTTTGAGAAACTGTGCGTTTATGCAATGTTGCTGAGCACATGGAGTATAGATATTCCCTTGAGGgcacattttgttttgttgctgtttcaAAGACTCGTGCTTTAACTACGAGAAAAGTATTTATTGACCATGCATAAGTAAGTTTTTATTACTGAAATGAGTTATTCTGAGAAAATAATTAAttctgagaaaaaaattaatggcaGTTATCATAATTCGTGTATTGTGATTTTGCCGTCCTATGATTTTGTATTTATAACGATGCAGTTCGCAAATTGTTTTTGTGTTCGTGTCGTCACAACTGAAAATCTATTTATGCAAGCAAAATGTTGAGTTTTGTTGCAATTTTGCTACTAACGAAGGGATAATTGAAATGCTGCTTGAAATAGAATCACCACAGATAAATGAGACTTCAACCCAACACACAGCCTTTCTACACCGGTAGAACTTTATCCATAATCTGCCGAGATTCAGATTATACTCATACTGTAacaatttctttccttttttacaGCACCCGTATGTTTTCCCTTTATTTGCAACCTTATGAGGAATATTCCTTCCCTAAGAGCAACTTTCACCATTCCCTTGAAGTCAGTCCAAAATCAGTGGCACCATATTTTGTATCTGAGTATTTAAATCGATCGAGACTTTTTAGCTCCGCTGCTAAACGGCTGTATACATTTATCTGAGTATTTAAATCGATCGAGACTTTTTAGCTCCGCAGCTAAACGGCTGTATACGTAAGTCACTAATTCTGATAGTACTTTTAATAACAGAAGATTTTCTCGTATGCTTTTTGTTTGAAGAGAAGGCgagaaaacattttgaattaaagtCCATTTTCCGACAATTTTGTATGATAATTTGTCAGTATTTAAAATGGAAGAGAATCGTTTGCGTCATATGGTTTCATATTTTGAtattaattaatatatttcgCAGCAAGGAAGTTTATTTACATGAAGAAAAGGAGAA

Protein

Uniprot

Uniprot term	Description
Q3V5Z9	Homeobox protein Hox-D3 OS=Oryzias latipes OX=8090 GN=hoxd3a PE=3 SV=1
A1L2P5	Homeobox protein Hox-D3 OS=Xenopus laevis OX=8355 GN=hoxd3 PE=2 SV=1
O42370	Homeobox protein Hox-D3a OS=Danio rerio OX=7955 GN=hoxd3a PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046	Homeodomain	Homeodomain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR020479	Domain	Homeobox domain, metazoa	Interproscan
IPR001356	Domain	Homeobox domain	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR001827	Conserved_site	Homeobox protein, antennapedia type, conserved site	Interproscan
IPR000047	Conserved_site	Helix-turn-helix motif	Interproscan
IPR017970	Conserved_site	Homeobox, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45664	PROTEIN ZERKNUELLT 1-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K09303	HOX_3; homeobox protein HoxA/B/D3	-	Transcription factors	ko03000	deepkoala