Gene detail

Detailed information of pspe_0.1.m1.41044.m1 in Pachyseris speciosa

Genomic Location: Sc0000410:677182...703703
NR annotation: KAI5752614.1, hypothetical protein M8J77_018629 [Diaphorina citri]
Species abbreviation PSPEC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

pspe_0.1.m1.41044.m1

TGGCcgaggaaaacaaaacagaagagTTGAAGCTACAGCTCTGCCAAGGCTGATTCTTATGAACACCGTGAATATCTGCGAAATTCATGTGTTCTAATCATAACAGTCATACGAACTATAACCACTCACACTCCAGGGTAAATTCGAGAAGCCGATTTGAGCTATACAATTTCAATACAAATGAAGACCAAGCTTTAATAAACAAGAAACTTCCAAAGGAACTTATTTTGAGGTCTCCCCATAATGACCATATCTATACAACAGCCATGTACCTCTCTCTCCAAGGTGCTGTTGTGGAGAGGATCTTTTCTTTTCTAGATGTAGTGACACTGTGCCGCTGTGCACAGGTTTCAAAGCTATGGAATGTCTTGGCATTGGATGGAAGCAACTGGCAAAGAGTTGATTTAATGATCTTTCAAAGAGATATAGAGCTCACCTTGATGAAAGCTCTTTTTAAAAAAAGAGTTGTATGAGACTGTAGTGCTAAATTTGTCCAGAAGATGTGTAGGTTTTCTGAAGAGTTTGAGTCTAAAGGGATAATATTTGCCCAGCAGTGTAAAAATATTGAAGAATTATGTTTAGAAGGATGTAAAAGAATATCAGACAGTACTGCCATTAGTTTAAGTAACTACAGCGGGCGACTCAAGAGATTAGATGTGTCATCTTGCCATCAAATCACGGATAACTCACTCAGTGCTTTAAGTAGGGGCTGCACTAAACTGGAGTGTGTAAATGTTTCCTGGTGTACTCAGATATCCTCGCATGGTCTAAAATTACTAGCTGAAGGCTGTCATAACCTACTTGTATTCATAGCAGAAGGATGTAGTTTGATCACAGATGAAGGCATTTATCATCTTACAAAAGGCTGCAATAGACTTCGTTCAATTAAGTTGAAAACCTGCGAGAACATCAAGGATGGTGCAATTAAGTCAATCAGTGAGCACTGCAGAGACCTGACTTTACTCTGTGTGTCAGGATGCATGCAGTTAACAGATTTATCACTTCAACATCTGGGAAACAATAGCCATGAACTTAGAACATTAGAAGCAGCTCAGTGCTCACAGCTCACAGATGCAGGATTTCAAGCTCTTTGTAGGGGTTGTAACAAACTTCAGCGACTGGACTTGGAAGAATGTGTTTTGAGTCTTTCTCACTGCGAGTTGATCACAGATGAAGGCATCAGACACTTCTGTGGGAGTCCATGCGCTGTTGATCACATTGAAGAACTAGAATTGGATAACTGCCCGCTCATCACTGATAACGCCCTAGACTACTTAATaatgtCTTGCAGGTGTGCCGATGAGCAGAACGAACCGACCAATCATCCAATCAATGAATGATCTCAACACGTTGCGTCTAGGAGCTAAAAACTCGTATAAATAGAATGAACAATTTTACATCGATCTTGTGTTTTTTAGAGTCCGCGTCCGATTGAATCGAAGCTTGCTAGCTAGCTTGCTGGCTTGTCAGCTAGTGTTTGATCGAAGAACgtggaaaataaataaattgttgTAATACTAAGTATGTTTTATAACCAAGTTAAGTACggtcgtccgggtgagtgtagtcctgagaagtgactctgatgatgacttccgctcaggttgtcgaaacgtcagtcaatgtcatcacaaatagtccttctcaggactacactaacccggacgatcgtacttCACTTCGTTATGATAAAAattatgactcctgggttcaaaccattgaCGAAATATGTTTTAATTGCAGTCACTGTCATCAACTAAAACGAGTGGAACTGTTTGACTGCCAGTTGATCACCAAAGCAGGAACAAGGAAGCTCAGGGCTCATCTACCAGACCTAAGAGTACATGAGTACTTTGCTCCAGTCACCCCTCCCCCGAGTGTTGGCGGTGGACGACAGAGGATGTGTCGTTGCTGCGTCATGTTATAGTGCTCACTTAGTCCTCTTGTTTAACAGTCGTTCTTAACTTTAGCAggtcttttgttttttgtaaaaACAGCAGACCACCTAGTTAGCTCAAGGAGTTGTTTCACTTACCACGTTGGAACCCTTCTCACGCACCGCTAACCTGACCATACAATTTGGTTTTGTTGAATACATTAACGACGATAAAAATAGGTACCTAAAcagtacatgtgtgggatacactgtccacaatgcattgcaaactttgcaatcATCGACTTACAAGCCGATGACGAAAGTGTgcgataccacaggtatcccacacaaaaatgtatGACGCATGCGATTGGTTTTTTTGCATTGAACAGAACCTGTTGTAGTGGGCCTTTTTTCCGTCGTTGATTTAAGCTTCCCAGAATTATTCCATTGACGGCATGAGCGGCGCGGTCATGAGACTGGGCTCCACTGTTTTGTTTGTCCACTGAACTTTCCTCCCGGGGaaacttcaactttgcatttcATCCGATGTTTTCTTGACGTAGTTTAATGAATCTTCTAGATTTCGCACAGTATAACAGCTTATGTTTGATGCATTTCTTTCAGCTGGTGAAAGATAATTTGAACTTAACGTAGCTTAAAGCAATGCCCCATAGAGCTTATCACTTATCTTCGGCACGAGAAACAAGTTTTGCAAGGGTTGCTGGGACATTGCTTTCTCCTCACCTGAAATGGCTTTGCTGTTGTGAAATATTTGATTGCAGCTCTCAAGAAATAAGTCGTTTATCTGCATGCACAAGAGTTCAGTACACTAAGACTGTTTTAATGGACCCAAGTTGATCAATTATTTCGCATAGATTATAAAAACACTCGGCTGGTGATGCAAGAAACTTGCTCTATATGTGTTTTATCCCATTCTGTTAGCTTCTATTTATGTTTTAAAAGCCATTTTAATTCTTGCCAAATTCATGTAAATATCATAATCAACTTTAACACAGTGTCATGGCTTTATAAGGTGCTCAAGAGATAAATTCATCGTAGGTAATAAGTTTGGATTCGTAAGGCAATTTGTGAATAATATTAAATTAAGTTTAGTGGTGGCGATTTTGGTCATAGCGTAAAGAGTACCAGCCATTTTATTGTACATAAGCAGAGCCAATCtcatatataatttatttaatttcaattttaatGCTATCGCCTGTGTGATGTTCAGTGGTTGTTGTCATGTAGAGTCGTGAGTCATGTTGACTGATAATTTAGGGAATGTTATAATTTTCAAATCTGTACTCTTTAGAGTTCGTTTCATGCTCTATTCTGGTTTAAAATAGTTGTCGTGAATTCTTGGTGTTCTGTACGAGGATTTTTTTAAACGGTACATCCATCATCGGCTGTTCCGTCTTTGTTTCTCGTAGAGGTAATTGTTGTTTAATTATGTACATTGTGTTGGTCTCCTAATCTCGAAACACAGCGATTCCCCTGAAACAGCCCCGCGTACCTTAAAAAGCACTGCCACCGCGGTTATTAGGAGTAGTCGTAATGCACCGTTGATCAGTATATAACAAAACCTAGGAGCCAGGATAACGGCGCCCGAGACAGCACAaagttttcatttgattttgaaaGTGCTAACGGGTTGCTCTTAAAATCTGATGTTCTGGTGGCTACATAGTATGTGGTAGAGTCTTGTATCTATTGCGCAGATGGAAAATCGAGGTATGTTGGTCACGCATTCTTTCATTTAGATTGCGTGATGACCACTTGAAAAGGAATCCGTTGATTGCCTGCAGTGTTGGTGATAAATCTTTTGTGAAGGTTTTTTATGAGCATTTGTTTGGCTTCCGGAAGACACGTGCCATGGTCTGCGTCCATGGCTAACCCCAGTCCCCTGCCGGTCAGGAGCATTCTTGTGTTGAAGTAGCTCTGATGaggatttctttctttttaatgATTATTAGATTTTAATTTGTCACCAGCATTGAGGCCAATGCAACAACCTATCCTGAAAGTTACGGGCAACAAGAAGGGTGGAAGCACTAGTTTTGTGATTGTTTTGGTTTCTGTGTTATATGAGGTATTGTTGTAGTTCAAAAACATAGCTGTTAGTTTTCTTATTAAGCAACCGCTTTTAATTATGATTGTGAACGGGGACCggaatttaaaaataaaattaaggtAAAGAACTTACTCTCGAGCTTTCATGCTTGACTGTTGTGATAACGCATGTATAAGCGTCGAGACGGAG

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005925 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13516 all species →	LRR_6	Leucine Rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR050648 all species →	Family	F-box/Leucine-rich repeat	Interproscan
IPR006553 all species →	Repeat	Leucine-rich repeat, cysteine-containing subtype	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13382 all species →	MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for pspe_0.1.m1.41044.m1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.