Gene detail

Detailed information of pspe_0.1.m1.41100.m1 in Pachyseris speciosa

Genomic Location: Sc0000412:218...4108
NR annotation: CAH3165022.1, unnamed protein product [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

pspe_0.1.m1.41100.m1

CAGTTTCTAGAGGTGGCTAGAGAAAGATATCTAAAAGGAAATCGTCACAAAGAGACTCACAGTAACATTGGAGACTATTTCTCGGGAGAGTTTCACGAAAAATATGGCAAAGACCGCGACATCCCAGCCCAGCCCCACGCCTACTCTTCGGTCGCTCTCAACCTAAGGAAACTGGACCGACTTCCTGTAGCACTGCTAGAGGCAGGTGACTTTAAGAGGCTACGAAGTACTCTGGGGGATTTGAAATTTATCCAGGCGAAGTGCATGGCGGGAATGGGATATGGGCTCCTTGCGGAGGCCACCAGAGCTGTGAGTTGTTCTGTGGATGAACAAGTCGAACCTCAGGTGACTGAGGATCTTCAAGATGTCTTGGCATTCTTACGCAGTGAGATTCACATCTTGAGTCGATCCCCGATTCTGGCGTACCAGCAGGCAGCAACCTATCCACAAGACCAATGGATCGCAAAGGAAGCTCAGCGCATCCGTCGAACATTTGATCAACCCGACCCCAACAACATCCCCACCCCGGAAGGGTGGATAGGGTGGGTCAACAAACCTCAAGTTCCTGAAGCCTTCGAGCTTGAGCTCAGTGGTCACTCAAAGGAAGTCCTTTCCACATGTTTTGGGAAGGATAACAAGACGCTAGTATCCGGATCAGCTGATGGGACCATCCGGGTTTGGGACAGTCAAACAGGGGAGCTTCATGCCCAGCTTGAGGATCATCAAGGACCTGTCACGTGCGTGAGGATTTCTACGGATGGGACAGTTATGGCTTCTGCCTCTGCAGACAAGACAATCAAACTGTGGAGTTTACCAGGCAATAAATGTTTTAGGATCCTCGAGGGACACCAAGATCGAGTGACTTGCGTCGCCTTCTCCAAGAATGGAGACAAGATTCTTTCATCTTCGAAAGACCAGTCGCTCAAAATCTGGAACGTAAACAACGCAGAGAGCGAGGGAACGCTCCTGGGCCACAAGAGCTTCCCTATGTCATGCGCCTGGTCGCCAATGGATGAATCAGTTGCTGCCTCATGTGGTGATCAACTGGAGCTCTTTATCTGGGACCTCAACGAGAGCAAGATCACTCACACCTTAACGGGACACCAGCGAGATGATAACCCAAATTTCCCAGTCAAGGACTCTTTGGAAGGCCATGAAGACCTTGACTTCAAATCCCTTGTTTGGTCAGTGTGCTTCTCGCCAGATGGAAGGCATCTCGCTTCAGCGTGTGTTGATAGTGACGTCATCTTATGGGATGTGAAGGCTGGGACGAGGATCTGGACATTTAATCTGCCAAACGACGCCTCAACTGTCGCCTTTGTCCAAACAGATCATGGTACGCTTCTGGCTGCAGGATCCTCGGCTCATCACACCGTTACTCTTTTTGACGCAACCTTTGATGGCGATAGTGTTGGTGACATTAGCAGTAGTTCCAGGACCCTTGCTTTGCTGGGCGGTCATTCCGACTGGGTGCTGGATGTGGCTTTCAATGGAGATGGCACCCTACTCGCATCTGCTTCCTCTGACAAAACGGTGCGAGTTTGGGACGCAACCGCTGCGGAAAAACTGCGGGAGGCACGTTTTCATTCGGAGCGCTGTTGGAGTGTGGCTTATTCTGATGATGAAAAATGGCTAGCATCTGCTTCAGATGACTTTAAGTCAGTTCTATTTAGTGATTTGACTCAGTTTAGGTCCTGTCGCcGTATGCGTTTGGGACATGGTGGCGTTCAAGTTTCTCTGATCTACGAGGGGCACGAACAGAAAAGAACCTTCTCCTGTGGAATCCGGGCATGTACCTTTTCCCATGACTCCAGCCTGGTCGCCAGTGGTGGAGACGAGCTCAAAATTCGTATTTGGTCACGGGAGTCTGGTAAAGATAAGATCGTGTTGAATTGCGGCGAGTCCATGCTTCCTTGGTGTCTGCGATTCTCTATGGATGACAAGCGGTTGATCTCCGTCGGCGAGTTTACCAACGGCGCAAACGTTTGGGATTTAGAAACGCAAAGCAAGGTTACCATTTTGGGAGGGCATGACCGCTTCTGTCAGTATACTGAGTTTTCGCCATCAGGAAAGTTCATCCTCACCACCTCCATCGACAACACCGCAAGAATCTGGAACAGCACCGATCTCAAGCACGTTACCACTGTATCGCAGCCTGACTGGGTAACCTGCGCTTCGTTTTCACATAACGAGCAGCTACTAGCTACTTGCTCAAAGGATGAGTTGGTTCGTCTGTGGAGTACCAGTACTGGCAGGAGGTCTGCA

Transcript

pspe_0.1.m1.41100.m1

Protein

Uniprot

Gene family

Uniprot term	Description
D4AZ50	Nuclear distribution protein PAC1 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) OX=663331 GN=PAC1 PE=3 SV=1
D4DG66	Nuclear distribution protein PAC1 OS=Trichophyton verrucosum (strain HKI 0517) OX=663202 GN=PAC1 PE=3 SV=1
C5FWH1	Nuclear distribution protein PAC1 OS=Arthroderma otae (strain ATCC MYA-4605 / CBS 113480) OX=554155 GN=PAC1 PE=3 SV=1

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680	Repeat	WD40 repeat	Interproscan
IPR019775	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR020472	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR050349	Family	WD repeat LIS1/nudF dynein regulation	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44129	WD REPEAT-CONTAINING PROTEIN POP1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan