Gene detail

Detailed information of pspe_0.1.m1.41433.m1 in Pachyseris speciosa

Genomic Location: Sc0000418:717701...730940
NR annotation: CAH3144769.1, unnamed protein product [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

pspe_0.1.m1.41433.m1

ATTTATGGCTGTTATGTCTCTGCAGGCTTATAGCATTCCAAGTAGTCCACCTCCAAGCTCATCCCAAAGAAGCTTATCAGCAAGTGATAGTCAAGATGAACCTGAAGAGAAGCTTAGCAAAACTAACCTGTACATTAGGGGCCTTTCACCAGGAACTACAGATgaggatttaaataatttatgtaGCAGATATGGAAATATTATTTCAACAAAAGCTATCCTAGATAAGaatactaataaatgtaaagGATATGGTTTTGTGGATTTTGAGTCTCCATCGGTAGCACAGAAGGCAGTGATAGCCTTGAAAAATAAAGGAATTCAAGCCCAGATGGCAAAGCAACAAGAGCAAGACCCTAcaaatttatattttctttaCCTTCCAAGGAATTTTGATGAAGCAAAATTAGAAGCAATGTTGAGAAGATATGGCAAAGTTATATCAACCAGAATATTAAGAGATACTGACCATGAGAGTAGAGGAGTAGGATTTGCAAGAATGGAAAATACACAGATTTGTGAACAAATAATTAAGGACTTCAATGGTAAAAAGATTTCAGATAGTATCGAACAACTTGTTGTCAAATTTGCTGATGGAGGTCCAAAGAAAAGACAGCAGACCCAGCAAAACCATGACAGTGCATGGTCAATGAACAGACAGGAGGGTGTGCCTATCTTAGGATATGGTGAACCAATTGTTATGCAAAATGGGTCCACTGTGAATAGTTCAGCTAGAGTAACACATGCTACTGTTCTTCCAGGGCAGGGAGCAACTTTTGTGCAGACAAACATACCATTAGCATACCAGCTTGCTGCAGCAGGAGGCGGCAGCTGGCTACATCAACCATACATTCAGATGCAGCATCAATTACAACCGAGTCAACTAGCAGCGGCAGCAACAGCAGTAACACCCTCTTCAATGGAACATAATGTTGGTCCAATGCAGCAGAGTTCAGTGCAGCATTTAACAAATCAGATGAACCAATTACAAATGTCCGGTTCACAGTACATCACCAGTCCAGTTCACAGTACATTCTCTCAAGCCTCATGGCAGATGATGCATCAACATGGACAACCACATCCCCACTATATGTCACTCGAGGACCATTCATTGGTCAGTGAAGGAGATCCCCTTGGTCCACCCATGTCACCGCAAGCTGCTGGTCTGCCGCAACATCTCACTGACCATGCTCAGTCACTGGAAGATCACCGGATGGGTACTTATGCATCACCTTATCAAAGGCAGAACCTTGTATTTATGAAAACTATTTTCTTctttgtcaaagaaaatgatGATGGCATAACAAACAAGGAAACTACAAATTATTTAAATTTGACGATTTGAAACTGTTTCATACACAATCTGGGCAAAAGAAAACACCCCTGACCAATGAGCGGAACAAGATTTATCAGGTCGCTTTGGAATCCGAGTGGGTCTGAAACTGGTGTTTTAATTAACCGGACTCTGTTAATGTGTTTGGTATTCCTTTTTAATTGAAAACAAGAGGGATGAAGAAGTCTATTTTTATGGTCCTGCTCTGAGAAATTTTTGCGGCCTTGAAAGCTACCGGTTTTAATGCGTGTTAGAATATGGAGTCCGGGAAAAACGAAGGCCAAGCCATTTCACATCTCCCTTCTCTGTAGAGTAGCTTTTTCGAGGAACTTAAAAATTACGTTTGCTGCCTGGGAATTTCAGAAAGATTGTTAACAATCGCTGATTGATcttaagtttttcaaaagagGCCAGTTTGGCAGAGATCTCAATAGCCCATTTTTCTTaagactgggaccgagtggccTCGCAAatgattgtgggattgtttggggggaCGCGTATCAGTATGAagaaacaatcccacaatccctcgcGCAGAACTCTtgatcccagtcttttccaaagttAGGTACTTCACTTAACCTGTGATCTGGCGTCCCTTTTTCTGAAGGCGGgttaaattttctttgaaacCTACAGTATATCCTCACGTGATGAACGAGCAGTGAATGGGCAATGATACCTCATACTTCGTACCTCTTACTTTGCTTCAATCTTGCCCCTATGGAGCAGTTAGGGGTAGATGTCATAAATTTTACCTCCCCAGATTTTCCCATCGGACGATTATTGGGTTCATCACTGACTTTTACCGCCGCCTTGTTTGAATTTGAAATAAGGAACTACAGTGCTACACGTCTGCGAGGTAGTTTCCAGTTTCAGCTGGACTCAAATTTCACAGGAAACTGGGTTTCATACGGCATCATAATCCCCCATCGGCCCCAGTACGTAGTCCATAATTGACCATACGAAGACTGGGTACGATAGCATGATATCAGAGATTGTTAAACAAAGCTCTTGAGAAAGAGTCTGGAAAAGAAATTCTCAGCCAAATGGACATTTTaaggaaatatttttttcccttgtAAAGGGATTCTGGGATTATTTTTTCACATCCTCGCGGGCGAGTGGCCTTCCAGGTTGTAAGTTTTCATTTCCTTGGTAATGAAATAATTCCATTCACATTGTCTTAACATTGTTAACAAGGCCCCATGTTCGTGTGTCTTAGGTGGGGCGGGATAAATTTTTGTTTccaaattaaaagaaagattattttaaattgCGTTTTTccaagaacaaacaaaaaattcgaATCTATTGTGATCCTTATTTAATTTCTAATAGCAGTTGTCACATAAGTCGGCGGTTAAGGTGAACAGTGTAGAATCGCATACAAACGAGACAGAATTCAATTACCTCGTTTTGATTCTCCTGTACACTTGACCGCGGGCTCGATGATGATAAGAGCTATTCTCGACTTCCTATTTTATGAGAAACTTACGATGATTTGTACAAACGCTGGCGCTTGATCTGTTAGAGTTTAAATCGTTTCGTAGCAAAAAAGAATTGGTGTGTTCAGCAGACTGTAGGGAAAACAGTGGATGACCTTTTGGGGTGCTAGGTTCTCTCAGTAGTTGTTATTTTgaagaatattttacagaaacCGATAACTGATGTAATGGCCGCTCTATTCGTCACGTGAATCTTCACGAATCAGAATCATTATCACGTGATAGTTGGTATGGGTGTACAGTGGAACCAATCTCGATTTTCCCATCCTCCTTTGGGGAGAATGCTCTGGCCCGTTAATGAATGACTTTGctaattttgcagttttctaaAATGTACGTCCGAAGGAGATTAATTTTAAGGTTGTGGAGTCAGGTTTGTGATTTTTGATGTTCTTCTACATCCAAATCGACCTGAATTTCTACGACTACAGATCTTTCTCGTCGAAAGACTATTAAGCGTTGTCAAcgttaaacaaagtcgatttGGAATTTACATGTGCGCTTTGTTCATTTTTTTCGTCGTCATCATTATGAGGGGTGATTTCCgccaaaattatgtttcaaattCTGTTATGCAGAATCTCCCATTTTTCTTACTGGCAATCAAATTCTTTTCTAAAGAGTTGGAACAGAAATTGAGAcacc

Protein

Uniprot

Uniprot term	Description
Q15434	RNA-binding motif, single-stranded-interacting protein 2 OS=Homo sapiens OX=9606 GN=RBMS2 PE=1 SV=1
Q3ZC34	RNA-binding motif, single-stranded-interacting protein 2 OS=Bos taurus OX=9913 GN=RBMS2 PE=2 SV=1
Q8VC70	RNA-binding motif, single-stranded-interacting protein 2 OS=Mus musculus OX=10090 GN=Rbms2 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002343	Family	Paraneoplastic encephalomyelitis antigen	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR050441	Family	RNA-binding motif	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48034	TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:1990904	Cellular Component	ribonucleoprotein complex	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005681	Cellular Component	spliceosomal complex	Interproscan
GO:0048026	Biological Process	positive regulation of mRNA splicing, via spliceosome	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K24990	RBMS; RNA-binding motif, single-stranded-interacting protein	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala