Detailed information of pspe_0.1.m1.41664.m1 in Pachyseris speciosa

Genomic Location: Sc0000423:233369...252634
NR annotation: KAJ7371938.1, hypothetical protein OS493_022036 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q8JIR0Polycomb complex protein BMI-1-A OS=Danio rerio OX=7955 GN=bmi1a PE=1 SV=2
P35226Polycomb complex protein BMI-1 OS=Homo sapiens OX=9606 GN=BMI1 PE=1 SV=2
Q5R8L2Polycomb complex protein BMI-1 OS=Pongo abelii OX=9601 GN=BMI1 PE=2 SV=1
Gene familySubfamily
Ubiquitin FamilyULD|UFD|RAWUL
Ubiquitin FamilyE3|E3 activity RING|RING

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13923zf-C3HC4_2Zinc finger, C3HC4 type (RING finger)DomainInterproscan
PF16207RAWULRAWUL domain RING finger- and WD40-associated ubiquitin-likeDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001841DomainZinc finger, RING-typeInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR032443DomainRAWUL domainInterproscan
IPR017907Conserved_siteZinc finger, RING-type, conserved siteInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10825RING FINGER DOMAIN-CONTAINING, POLYCOMB GROUP COMPONENTInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000122Biological Processnegative regulation of transcription by RNA polymerase IIInterproscan
GO:0035102Cellular ComponentPRC1 complexInterproscan
GO:1990841Molecular Functionpromoter-specific chromatin bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K11459PCGF4, BMI1; polycomb group RING finger protein 4-Chromosome and associated proteinsko03036deepkoala

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