Gene detail

Detailed information of pspe_0.1.m1.41761.m1 in Pachyseris speciosa

Genomic Location: Sc0000425:266792...294689
NR annotation: KAJ7386310.1, THO complex subunit 1 [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

pspe_0.1.m1.41761.m1

GGAAGTAATATGGCGGACGACGCGAGGATTGATTTTCAGTCAGCTAGAACGCATTTGACGTCTTGtataaacaaagcaaaagatgTCAACAACGTGGCTGAGTTGACTGCTGTTTTCCAAACTACTCCTGGAAGCGAACAGGAAAAGAAACTTGTCGTCGATCAGGCTTTCAGAGATCTTGTAAAAGAAACTGTGTTAACAGGAGGAAATATGGAGAGATACAAACTTTTGATTAGTTTGGTTATCAAGTCAGCAGTGGAAGGACACTGTTCTCCTAACTTGGTGTTCATTTTGTTAAGTGACGTGTTTGACTGTATCACCTTGGAACAGTGTGATCCTCTGTTCACCTTTGTTGAAGAAAGGGTATCTACTTGGACTATGGTTGCTTCATTTTATGCATTTTCAGCCCTTATTCTTTTCTGCTGGAAAGAATCTTCTACTAAGGATGTGCAATGggcttttctctgCCAAGAGGAGGGCGGGCCCATCTCGGcagagaaaagccctgggaatgAAGTTGGTTTCCAGCCCTCCCTCCCAGTAGAGGAGGTTTTTGTAGTACATGAAAAAACTTCTACTACCGGAACTGAAATGGAGGTTGATGACAGAGAAGCTGGTGAACTGACATCAAGTAATGTCCCAATAGATTTTAATCTATACAAGAAATTTTGGGCTTTACAAGATTATTTTAGAAACCCCACTCAGTGTTACAACAGTGCAACATGGAAGTCTTTTACACAATATACTAAAGAAGTCTTGAATGTGTTTAAAAGCCACAAACTAGAACATGTAACATGGAAAAAGAAAGCAGCTGACCTAAAGAATCTTGAAGGAAGCAATAGCAAGGATGAAGCTCTTTACTTTGCCAAGTTTCTGACCAATGAAAAGCTCCTTGACCTTCAATTAAGTGATAGCAATTTTAGGAGAACTATCCTTGTCCAGTTGTTGATAATTTACCAGTACTTAGTTGGAAACATAAAATTCAAAAGTCCAAACCAAGTCTTGAACGAGTCACAAAGTTCCTGGGTGAAAGAGATGACATCTCAGGTTTATGAGTTGCTCAAGGAAACTCCTCCAGATGGAGACAGATTTGCAAAGACTGTTGAGCATATCCTAGAACGAGAAGAGAACTGGATATCGTGGAAAAATGAAGGCTGTCCATCTTTCATTAAAGAAAGAATTGAAGAGGACGTGAACCAAAAACCAGCAAGGAAGCGAAAACTGAGCATTGGGGACGAGGTCTCATCTGGGTGGAGGTCCAAGAAAGTGTTTTTGGGAAGTAATGAATTGACTCGTCTGTGGAATTTGTGTCCTGACAACTTGGAGGCTTGTAAAGCTGATAACAGAGTTTTTCTTCCCACACTCGAGGAGTATTTTTCCGAAGCTATAGAACAAGCTGATCCTGATGCTATGGTAGAAGATGAATACAAGGTTATAAAGAACAGTAACTATGGCTGGCGAGCGTTACGTCTTCTTGCCCGAAGAAGCCATCACTTTTTCCAGCCGAGCACTAATCCATTCAAAACACTGCCGGACTATCTTGACAGTGTGGTGCAGCAGCTGGCTCAGGAATTACCGAACCTCAAGCCTGAGGAAGGCATCGTGGTTAACGGGACCACAGAGTCAACTGTACCTCTCACATGATGCAGGACACTGCACAAGACACACATTCAGAAGACAATGCATCTGCACGCAACTGCATCACCGATTTGTCAACGATAGTTCACTATTTAATGTATatatttttcattaaaaaatattatttaatgTCTTTGTCCTTTTGACAGGAATGAAAGTGCacccccaaaatattttttcgctacctAAATGTTTTCTCCTGTTCGAAACGGATTGAGCCTTCACACaactttttaaaaccaaatcttgactttttattgcCTCTAAAACCAACCTCTGTCACATGACCGAGCTATTAAGGGGCGTGGCTCTATTCCTGATTTTGACGTCACGAAGTGATTTGCATACTTAAACATCAGCCTGCGCGCAGACCTCTCCTATGCTTTTGGTCTTGATGCTCTTGAGGCTCTTGACCTTGATGCTCTTGGTCTCTTTCAAGTTCTATGAATTGACAGTCTACACTTTTCGGCCTTCGCATATGTTAAAGCCTCCAACTTAAGAAGCGAACCTATTCAACAAACTAACCTCTGTCAGCCATTTGAGCCAATAACAGTCCAAACCCTAACACTAAGAACCCTCATCCAGGGGCGTCATGACTCGAGTTGGATCAGGTTTAGCGTTAGGGCAGTCACTGTACAGAAAATTGCAGTTAATTTGACGTGCTGACCCACTTTGAGATCTTGATGAAGGTGAAGACCGTCTTTATAAGGCTTTGACATAATGTCAAATATTGTAAAGGCTTAGTCTAAAGTAACTGATGCACTTTTGGTCAATATCACGGGCAACAAAACAGTGCTGTCAAATTCTTGCTTTGATTTATGGATATGTCTGTAGTTTGTCCTTCCATCTCCTCCTTGGCATTCCCGCACACAAACTCCCTTCCATGACTGGTTTTTATCTCGCTTGCATGTTATGACAAAGTATAAGATTCGTGTAGAGGCTAACCAAACCGCAGCAGCTCTAAGCAAAAACTGACAATTGTTGTGTATCTTTTCTAATTATtttagtgcc

Protein

Uniprot

Uniprot term	Description
Q96FV9	THO complex subunit 1 OS=Homo sapiens OX=9606 GN=THOC1 PE=1 SV=1
Q8R3N6	THO complex subunit 1 OS=Mus musculus OX=10090 GN=Thoc1 PE=1 SV=1
Q7SYB2	THO complex subunit 1 OS=Danio rerio OX=7955 GN=thoc1 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11957	efThoc1	THO complex subunit 1 transcription elongation factor	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR021861	Family	THO complex, subunit THOC1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13265	THO COMPLEX SUBUNIT 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000445	Cellular Component	THO complex part of transcription export complex	Interproscan
GO:0006406	Biological Process	mRNA export from nucleus	Interproscan
GO:0032784	Biological Process	regulation of DNA-templated transcription elongation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12878	THOC1; THO complex subunit 1	-	Spliceosome	ko03041	deepkoala