Gene detail

Detailed information of pspe_0.1.m1.41779.m1 in Pachyseris speciosa

Genomic Location: Sc0000425:528879...534922
NR annotation: XP_015763719.1, PREDICTED: 60S acidic ribosomal protein P2-like [Acropora digitifera]
Species Pachyseris speciosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O01725	Large ribosomal subunit protein P2 OS=Branchiostoma floridae OX=7739 PE=3 SV=1
P08094	Large ribosomal subunit protein P2A OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpp201 PE=1 SV=1
O14317	Large ribosomal subunit protein P2C OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpp203 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008715 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00428 all species →	Ribosomal_60s	60s Acidic ribosomal protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038716 all species →	Homologous_superfamily	Large ribosomal subunit protein P1/P2, N-terminal domain	Interproscan
IPR044076 all species →	Family	Large ribosomal subunit protein P2, eukaryotes	Interproscan
IPR027534 all species →	Family	Large ribosomal subunit protein P1/P2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21141 all species →	60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0002182 all species →	Biological Process	cytoplasmic translational elongation	Interproscan
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0022625 all species →	Cellular Component	cytosolic large ribosomal subunit	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006414 all species →	Biological Process	translational elongation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02943	RP-LP2, RPLP2; large subunit ribosomal protein LP2	-	Ribosome	ko03011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.